Jatropha Genome Database

JcCA0311291.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311291.20 - phase: 0 
         (344 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29631.m001020 conserved hypothetical protein                          485   e-137

>29631.m001020 conserved hypothetical protein
          Length = 329

 Score =  485 bits (1248), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/344 (72%), Positives = 271/344 (78%), Gaps = 20/344 (5%)

Query: 1   MDEKDVKIKGMETSHSVRNRSHKAFDPSFXXXXXXXXXXXXXXXXEKNEIQ-LLQSQISK 59
           M E DVK   M T +S+RN   KAFDPS                   N++Q  L+SQ  K
Sbjct: 1   MSEADVKRTAMGTPNSMRNGRRKAFDPS-------------DLVQLPNKLQNCLKSQFRK 47

Query: 60  LAKDNDGATSVGKEEVLPSALRIDLERQLQNWRENPSWVDQSPEIKVSVPKGSLCNLNVK 119
           LAKDN+GATSV  E     A++IDL+RQLQ WRENPSW+DQ PEIKVSVPKGSLCNLNVK
Sbjct: 48  LAKDNEGATSVTMEGGSFDAVKIDLDRQLQTWRENPSWIDQPPEIKVSVPKGSLCNLNVK 107

Query: 120 CNVGLPPDAVYNIVIDPDNRRVFKNIKEVISRKVLLDEGHRQVVEVEQAAIWKFLWWSGT 179
            NVGLPPDAVYNIV DPDNRRVFKNIKEVISR+VLLDEGHRQVVE+EQAAIWKFLWWSGT
Sbjct: 108 FNVGLPPDAVYNIVTDPDNRRVFKNIKEVISREVLLDEGHRQVVELEQAAIWKFLWWSGT 167

Query: 180 ISVHVLVDQNRKDLTMKFKQVKTGFMEKFEGCWRVEPVFVDEDICYPFKPKTWAEYHSCT 239
           ISVHVLVDQNRKDLTMKFKQVKTGFM++FEGCWRVEPVF+D+DICYPFKPKTWA+Y  CT
Sbjct: 168 ISVHVLVDQNRKDLTMKFKQVKTGFMKQFEGCWRVEPVFIDQDICYPFKPKTWADYCWCT 227

Query: 240 RGKGRIGSKVSLEQLIQPTIVPPPPISWYLRGITSRTTEMIVYDLLAEAARIRGDLNTVR 299
            GKGRIGSKVSLEQLIQP +VPPPPISWYLRGIT+RTTEMI  DLLAEAARIRGD N   
Sbjct: 228 GGKGRIGSKVSLEQLIQPALVPPPPISWYLRGITTRTTEMIANDLLAEAARIRGDFNN-- 285

Query: 300 SEELETSHNSNDECRSGAKSSDIKERWAMHRSAKKHLRRRLLTA 343
           + + ETS NS        KSSDIKERWA HR   K   RRL TA
Sbjct: 286 NADSETSQNS----YRIDKSSDIKERWAHHRRIAKRHHRRLFTA 325