Jatropha Genome Database

JcCA0311281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311281.10 - phase: 0 /partial
         (702 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014390 brca1 interacting protein helicase 1 brip1, putative   1129   0.0  
29872.m000552 regulator of telomere elongation helicase 1 rtel1,...   319   2e-87
29647.m002100 DNA repair helicase rad3/xp-d, putative                 137   2e-32
30146.m003597 conserved hypothetical protein                           63   5e-10
30146.m003598 conserved hypothetical protein                           59   1e-08

>30170.m014390 brca1 interacting protein helicase 1 brip1, putative
          Length = 1248

 Score = 1129 bits (2921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/701 (79%), Positives = 617/701 (88%), Gaps = 9/701 (1%)

Query: 1   MAVLASRKHYCTNSHVNGKENLDEEWYAFKVKRPKLLSTS-RNAVKVRGHPSLQRGGCHE 59
           MAVLASR+HYCTN+HVNGKEN+DEE     +K P       +NA KV+GHPSLQRGGCHE
Sbjct: 173 MAVLASRRHYCTNAHVNGKENIDEECKLL-LKDPDAGCLQFKNAHKVKGHPSLQRGGCHE 231

Query: 60  VHDIEDLVKIGKVVKGCSYYAARSMADDAQLVFCPYSYLINPVIRGAMDINITGAILILD 119
           VHDIEDLVK+GKVV+GCSYYAARSMADDAQLVFCPY+Y+INPVIRGAM+I+I GAILILD
Sbjct: 232 VHDIEDLVKVGKVVRGCSYYAARSMADDAQLVFCPYNYVINPVIRGAMEIDIRGAILILD 291

Query: 120 EAHNIEDIARDAGSVDVDEDVLIKLQMELQQLCLLDASIYEPLHDMAQDLVSWIKRRKST 179
           EAHNIEDIARDAGSVDV+ED+L KLQ EL+QLC+ + SIY+PL++M QDL+SWI +RKST
Sbjct: 292 EAHNIEDIARDAGSVDVEEDILYKLQTELEQLCVHNTSIYQPLYEMTQDLLSWIDQRKST 351

Query: 180 LQKREFQNYFSCWTGDKALKELQEANISQQCFPILLDCATKAIKAATDTELDTDHLSGMS 239
           LQK  FQ+YFS W+GDKAL+ELQEANISQQCFPILLDCA KAIKAATDTE D  HLSGM+
Sbjct: 352 LQKHGFQHYFSSWSGDKALRELQEANISQQCFPILLDCALKAIKAATDTEPDIAHLSGMA 411

Query: 240 VIVLEGLFSSLTYFFSRNGCHISDYQLALRRYVKRDKKNPVGDWTCTLSLWCLNPAVVFS 299
           VIVLEGLFSSLTYFFSRNGCH+SDYQLAL+R++KRD+K+PVG+WT TLSLWCLNPAVVF 
Sbjct: 412 VIVLEGLFSSLTYFFSRNGCHVSDYQLALQRHIKRDRKSPVGEWTLTLSLWCLNPAVVFR 471

Query: 300 DIAKISLSVILTSGTLSPMNSFCSELGVHFGTCLEAPHVIDTESQVWAAVISTGPDNYPL 359
           DIA +SLSVILTSGTLSPMNSF SELGV FGTCLEAPHVID ESQVWAAVISTGPDNYPL
Sbjct: 472 DIADLSLSVILTSGTLSPMNSFSSELGVQFGTCLEAPHVIDNESQVWAAVISTGPDNYPL 531

Query: 360 NASYKTADEYAFQDALGKTLEEICMIVPAGSLVFFPSYKLMEKLCSRWRETGQWARLNAR 419
           NASYKTADE+AFQDALGKTLEEICMIVPAGSLVFFPSYKLMEKLC+RWRETGQW+RLNA+
Sbjct: 532 NASYKTADEFAFQDALGKTLEEICMIVPAGSLVFFPSYKLMEKLCNRWRETGQWSRLNAK 591

Query: 420 KTLFVEPRGGSQEEDFDSVLKGYYDSIHQRSPQAVGRKRRTKKADLSHLKAMKSTETSEK 479
           K+LFVEPR GSQEE+FDSVLKGYYDSI + +  AVGRK+R K+ DL   KA++STE   K
Sbjct: 592 KSLFVEPR-GSQEEEFDSVLKGYYDSICKCNTHAVGRKKRVKRLDLK--KAVESTENLGK 648

Query: 480 DGAAFLAVCRGKVSEGMDFSDDNARVVIVVGIPFPNIHDIQVGLKKNYNDAYKASKNLLS 539
            GAAFLAVCRGKVSEGMDFSDDNARVVIVVGIPFPNI DIQV LKK+YND YK SKNLLS
Sbjct: 649 -GAAFLAVCRGKVSEGMDFSDDNARVVIVVGIPFPNILDIQVRLKKSYNDTYKTSKNLLS 707

Query: 540 GNEWYCQQAFRALNQAIGRCIRHRFDYGAIVLLDERYKKEQNKIYISKWLRKSIRQYDSY 599
           GNEWYC QAFRALNQAIGRCIRHRFDYGAI+LLDERYKKEQN++YISKWLRKSI QYDSY
Sbjct: 708 GNEWYCYQAFRALNQAIGRCIRHRFDYGAIILLDERYKKEQNRMYISKWLRKSICQYDSY 767

Query: 600 GMSIEGLKSFFRDAKENIGKKMVDLLPNSDTNEGKNLCPRDQIKRCTGNKNQKLNKPDLC 659
            MSIEGLKSFFRD KENIGKKMVD LPNS+T EG+ + PR+     T  KNQKLNK D C
Sbjct: 768 SMSIEGLKSFFRDVKENIGKKMVDQLPNSET-EGQKISPREPANGFTRKKNQKLNKSDNC 826

Query: 660 EGKLVSVIKCDSVSPKLGFQDDIGGQEAKQMSEDVETRESI 700
            GKLVS +KC+++S  L  QD I  Q   Q+ +D+++R  I
Sbjct: 827 AGKLVSSMKCNAIS-HLKSQDYI-EQSYMQIDQDIDSRREI 865


>29872.m000552 regulator of telomere elongation helicase 1 rtel1,
           putative
          Length = 1049

 Score =  319 bits (818), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 232/725 (32%), Positives = 349/725 (48%), Gaps = 93/725 (12%)

Query: 1   MAVLASRKHYCTNSHVN---GKENLDEEWYAFKVKRPKLLST--SRNAVKVRGHPSLQRG 55
           M +L SR+  C +  V+   GK   +   Y  K +R K   T  +R +  VR +P L   
Sbjct: 124 MVILGSREQLCIHDEVSLLRGKAQTNACHYVCK-RREKRQCTHFARVSDYVRKNPHLG-- 180

Query: 56  GCHEVHDIEDLVKIGKVVKGCSYYAARSMADDAQLVFCPYSYLINPVIRGAMDINITGAI 115
              E  DIEDLVK+G+    C YY +R +     ++F PY+YLI+   R ++ I+   +I
Sbjct: 181 --DEPVDIEDLVKMGRRFGPCPYYVSRELHKVVDILFAPYNYLIDRSYRKSLKIDWDKSI 238

Query: 116 LILDEAHNIEDIARDAGSVDVDEDVLIKLQMELQQLCLLDASIYEPLHDMAQ--DLVSWI 173
           LI DEAHN+E +  DA S D+   +L     E +    L  +  E  +D ++  D  + +
Sbjct: 239 LIFDEAHNLESLCADAASFDLSSGLLTACISEAKSCIELSVARREDSNDKSRNPDNFAIL 298

Query: 174 KRRKSTLQKR------EFQNYFSCWTGDKALKELQEANISQQCFPILLDCATKAIKAATD 227
           K     L+KR      E ++      G    + L + +I+ +    L D      +AA  
Sbjct: 299 KAILLKLEKRIAEVPIESKDLGFTRPGPYIYELLADLHITHETATKLTDIIE---EAALL 355

Query: 228 TELDTDHLSGMSVIVLEGLFSSLTYFF-SRNGCHISDYQLALRRYVKRDKKNPVGDWTCT 286
            E D  + +  +V  LE +       F  ++  H + Y++ ++        +  G  + T
Sbjct: 356 LEEDKQNTAKGTVCRLESMGDIFKIIFREKSNAHANFYRVHVQEVEASASDSLRGKASRT 415

Query: 287 LSLWCLNPAVVFSDIAKISL-SVILTSGTLSPMNSFCSELGVHFGTCLEAPHVIDTESQV 345
           LS WC NP V   + +++ + S+ILTSGTLSPM+SF  EL + F   LE PHVI ++ Q+
Sbjct: 416 LSWWCFNPGVAMEEFSRMGVCSIILTSGTLSPMDSFAQELKLDFPIRLENPHVISSK-QI 474

Query: 346 WAAVISTGPDNYPLNASYKTADEYAFQDALGKTLEEICMIVPAGSLVFFPSYKLMEKLCS 405
           WA V+  GP     N+SY+  D   ++  LG  +     IVP G LVFFPSY L+++   
Sbjct: 475 WAGVVPVGPSGRSFNSSYRNRDSLEYKQELGNAIVNFARIVPDGLLVFFPSYYLLDQCIG 534

Query: 406 RWR------ETGQWARLNARKTLFVEPRGGSQEEDFDSVLKGYYDSIHQRSPQAVGRKRR 459
            W+       T  W R+   K   VEPR   Q   F   ++ Y                 
Sbjct: 535 CWKNVTHASSTTIWERICKHKQPVVEPR---QSSLFPLAIEDY----------------- 574

Query: 460 TKKADLSHLKAMKSTETSEKDGAAFLAVCRGKVSEGMDFSDDNARVVIVVGIPFPNIHDI 519
                   +  +K T TS   GA F AVCRGKVSEG+DF+D   R V+++G+PFP+ +D 
Sbjct: 575 --------MAKLKDTSTS---GAVFFAVCRGKVSEGLDFADHTGRAVMIIGMPFPSRNDP 623

Query: 520 QVGLKKNY--------NDAYKASKNLLSGNEWYCQQAFRALNQAIGRCIRHRFDYGAIVL 571
           +V LK+ +         DAYK+   LL+G  WY QQA RA+NQA+GR IRHR DYGAI+ 
Sbjct: 624 KVRLKREFLDEQLCLQRDAYKS--QLLTGESWYTQQASRAVNQAVGRVIRHRHDYGAIIF 681

Query: 572 LDERYKKEQNKIYISKWLRKSIRQYDSYGMSIEGLKSFFRDAKENIGKKMVDLLPNSDTN 631
            DER+    ++  IS W++  I+ +  +G  +  L  FFRD    +  K + +    +  
Sbjct: 682 CDERFAHSNSQSQISLWIQPHIKCHSKFGDVVFTLSRFFRDGPTKL--KTIKIEDMENVR 739

Query: 632 EGKNLCPRDQIKRCTGNKNQKLNKPDLCEGKLVSVIKCDSVSPKLGFQDDI----GGQEA 687
           E K   P D+                  +G L +    D  SP +     +    GG+E+
Sbjct: 740 EMKTTQPIDKF---------------YLDGFLSTPTPQDQ-SPGVKLSSSLLKVRGGKES 783

Query: 688 KQMSE 692
           KQ+ E
Sbjct: 784 KQLQE 788


>29647.m002100 DNA repair helicase rad3/xp-d, putative
          Length = 758

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 160/676 (23%), Positives = 266/676 (39%), Gaps = 130/676 (19%)

Query: 4   LASRKHYCTNSHVNGKENLDE----------EWY-AFKVKRPKLLSTS--RNAVKVRGHP 50
           L+SRK+ C N  V   EN D            W  A   + P + +     N  +     
Sbjct: 109 LSSRKNLCVNPRVLAAENRDSVDAGCRKLTASWMRAMAAENPNIPTCEFFENYERAASAA 168

Query: 51  SLQRGGCHEVHDIEDLVKIGKVVKGCSYYAARSMADDAQLVFCPYSYLINPVIRGAMDIN 110
            L  G    V+ ++DL   GK    C Y+ AR M   A +V   Y YL++P + G +   
Sbjct: 169 VLPPG----VYTLQDLRTYGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKE 224

Query: 111 ITG-AILILDEAHNIEDIARDAGSVDVDEDVL-------IKLQMELQQLCLLDASIYEPL 162
           +   ++++ DEAHNI+++  +A SV V +  L        ++  E+++    DA      
Sbjct: 225 MQKESVVVFDEAHNIDNVCIEALSVSVRKQTLEGASRNLSRINQEIERFKATDAG----- 279

Query: 163 HDMAQDLVSWIKRRKSTLQKREFQNYFSCWTGDKAL-----KELQEANISQ-QCFPILLD 216
                 L +   R    L +R        W  + AL     KE    NI + + F  +L 
Sbjct: 280 -----RLRAEYNRLVEGLAQRGNLAVTDTWLSNPALPDDILKEAVPGNIRRAEHFLHVLR 334

Query: 217 CATKAIKAATDTELDTDHLSGMSVIV-------------------LEGLFSSLTYFFSRN 257
              + +K   DTE + +  S +S +                    L  L  +L    +  
Sbjct: 335 RLVQYLKGRLDTE-NVEKESPVSFVASLNSQAGIDQKTLKFCYDRLHSLMLTLEITDTDE 393

Query: 258 GCH---ISDYQLALRRYVKR--------DKKNP-VGDWTCTLSLWCLNPAVVFSDIAKIS 305
             H   I D+   +  Y +         D++ P + D    LS  C + ++    +    
Sbjct: 394 FLHVQTICDFATLVGTYSRGFSIIIEPFDERMPHIPDPVLQLS--CHDASLAIKPVFDRF 451

Query: 306 LSVILTSGTLSPMNSFCSELGVH------FGTCLEAPHVIDTESQVWAAVISTGPDNYPL 359
            SV++TSGTLSP++ +   L  H      F   L       T   +   V++ G D  P+
Sbjct: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFTMSL-------TRDCICPMVLTRGSDQLPV 504

Query: 360 NASYKTADEYAFQDALGKTLEEICMIVPAGSLVFFPSYKLMEKLCSRWRETGQWARLNAR 419
           +  +    +       GK L E+  +VP G + FF SY  M+ + + W ETG    +   
Sbjct: 505 STKFDMRSDPGVARNYGKLLVEMVSVVPDGIVCFFVSYSYMDGIINSWNETGILKEIMQH 564

Query: 420 KTLFVEPRGGSQEEDFDSVLKGYYDSIHQRSPQAVGRKRRTKKADLSHLKAMKSTETSEK 479
           K +F+E +          V++      + R     GR                       
Sbjct: 565 KLVFIETQ---------DVVETTLALDNYRRACDCGR----------------------- 592

Query: 480 DGAAFLAVCRGKVSEGMDFSDDNARVVIVVGIPFP-NIHDIQVGLKKNYNDAYKASKNLL 538
            GA F +V RGKV+EG+DF     R+VI+ GIPF   +  I +   +   D ++     +
Sbjct: 593 -GAVFFSVARGKVAEGIDFDRHYGRLVIMFGIPFQYTLSKILLARLEYLRDTFQ-----I 646

Query: 539 SGNEWYCQQAFRALNQAIGRCIRHRFDYGAIVLLDERYKKEQNKIYISKWLRKSIRQYD- 597
              ++    A R   Q +GR IR + DYG ++  D+RY +   +  +  W+   +R  + 
Sbjct: 647 KEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDANL 706

Query: 598 --SYGMSIEGLKSFFR 611
             S  M++   + F R
Sbjct: 707 NLSTDMALHIAREFLR 722


>30146.m003597 conserved hypothetical protein
          Length = 152

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query: 62  DIEDLVKIGKVVKGCSYYAARSMADDAQLVFCPYSYLINPVIRGAMDINITGAILILDEA 121
           DI+DLV+IG  +  C YY +RSM   A LV  PY  L++   R  + +N+   I+I+DEA
Sbjct: 42  DIKDLVRIGISIGTCPYYGSRSMVPAADLVVLPYQSLLSKSSREMLGLNLKNNIVIIDEA 101

Query: 122 HNIED 126
           HN+ D
Sbjct: 102 HNLAD 106


>30146.m003598 conserved hypothetical protein
          Length = 282

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 11/132 (8%)

Query: 297 VFSDIAKISLSVILTSGTLSPMNSFCSEL-------GVHFGTCLEAPHVIDTESQVWAAV 349
           +FS+I   + +++L  GTL PM      L        +HF +C    H++  ES +   V
Sbjct: 150 MFSEIVHEAHAIVLAGGTLQPMEETRERLFPWLPPRQLHFFSC---SHIVPPES-ILPIV 205

Query: 350 ISTGPDNYPLNASYKTADEYAFQDALGKTLEEICMIVPAGSLVFFPSYKLMEKLCSRWRE 409
           +S GP     + SY         + LG  L  +  IVP G +VFF S++   K+   W+ 
Sbjct: 206 VSRGPSGQSFDFSYSCRSSSNMIEELGLLLCNLVAIVPKGIVVFFSSFEYKGKVYDAWKT 265

Query: 410 TGQWARLNARKT 421
           +    R+  +KT
Sbjct: 266 SDILERIKKKKT 277