Jatropha Genome Database

JcCA0311161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311161.10 + phase: 0 
         (272 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008868 conserved hypothetical protein                          385   e-108

>30128.m008868 conserved hypothetical protein
          Length = 221

 Score =  385 bits (990), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/235 (81%), Positives = 203/235 (86%), Gaps = 14/235 (5%)

Query: 38  FFSTIPSSIHNLQRPLPILSRRVFLPSVSGIWDALTGGGGNNPRQAVLKIRRGMSLFREG 97
            FSTIPS IHNLQ PLPILSRR+FLP+VSGIWDALTG   NN R+AVL IRRGM LFR+G
Sbjct: 1   MFSTIPSRIHNLQHPLPILSRRLFLPAVSGIWDALTGAN-NNAREAVLAIRRGMLLFRQG 59

Query: 98  DVLGSLAEFDKAIELDSRQKACRFDLWQRGLSLYYLDRFEEGAKQFRLDVAQNPNDTEES 157
           DVLGSL EFDKA+ELD RQKA    LWQRGLSLYYLDRFEEGA+QFRLDVAQNPNDTEES
Sbjct: 60  DVLGSLVEFDKAMELDPRQKAY---LWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEES 116

Query: 158 IWCFLCEAQLYGVDEARKRFLEVGRDPRPVMREAYNMFKDGGDPEKLVTAFSNGSENEYF 217
           IWCF          +ARK+FLEVGRDPRPVMREAY+MFKDGGDPEKLVTAFSNG ENEYF
Sbjct: 117 IWCF----------QARKQFLEVGRDPRPVMREAYSMFKDGGDPEKLVTAFSNGRENEYF 166

Query: 218 YASLYAGLYHESQKKLDAAKFHIVAACKSLYGQRSDDYMAALSKVHCLCRNWSID 272
           YASLYAGLYHESQ + DAAKFHIVAA KS YGQ SDDYMAAL+ VHCLCRNWSID
Sbjct: 167 YASLYAGLYHESQNEPDAAKFHIVAASKSPYGQGSDDYMAALANVHCLCRNWSID 221