Jatropha Genome Database

JcCA0311061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311061.10 + phase: 0 
         (526 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30073.m002313 origin recognition complex subunit, putative            653   0.0  

>30073.m002313 origin recognition complex subunit, putative
          Length = 715

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/517 (64%), Positives = 390/517 (75%), Gaps = 9/517 (1%)

Query: 1   MAQSTAATATDSPHLLAPDVTESNLQPFFVLHEGSS--HXXXXXXXXXXXXXXXIDLSPT 58
           MA S  A + +SP     D++E+NLQPFFVL E +S  +               IDLSP+
Sbjct: 1   MAPSATANSPNSPTSPPTDISENNLQPFFVLREATSSHNKSNERPNKTPKTRRRIDLSPS 60

Query: 59  LTKNGENTETEKVE-DSDDHQYLAKRMEAFEAVWSKIESTIKAVLRNLNASSFNEIHQWV 117
                +N ETEK E +SDDH+++ +RMEAFE +WSKIESTIK VLR+LN S F+EI++W+
Sbjct: 61  -----KNKETEKPEGESDDHEFVHQRMEAFELIWSKIESTIKDVLRDLNTSVFDEIYRWI 115

Query: 118 CESFKTLTSFGTPSFHEATRPFPLVQGVISKQVFTGVVLTKNMEFVDDLLTFEELGLHLK 177
            ESF ++ S G PSF EAT+ FP  + V SK++FTG+VLTKN+EF DDLLTF+ELGLHLK
Sbjct: 116 RESFNSIKSCGEPSFLEATQSFPAAKDVTSKKLFTGLVLTKNLEFADDLLTFKELGLHLK 175

Query: 178 SKGCHVANLSSLDFSVKNGIGGCLRSLLRQLVMVTLDAPDISILATWYREQGNCNNPIVV 237
           S+GC+VANLSSLDFSVKNGIGGCLRSLLRQLVMVTLDAPDISILATWYREQG+C NP+V+
Sbjct: 176 SQGCYVANLSSLDFSVKNGIGGCLRSLLRQLVMVTLDAPDISILATWYREQGDCTNPVVI 235

Query: 238 IIDDLERCCGSVLSDFILMLSEWILKIPVILIMGVATTLDALRNILPSNMIHHLCPCNFI 297
           IIDDLERCCGSVLSDFI+ML EW+LKIPVILIMGVATTLDA+RNILP+NM+HHLCPC FI
Sbjct: 236 IIDDLERCCGSVLSDFIIMLCEWVLKIPVILIMGVATTLDAVRNILPANMLHHLCPCKFI 295

Query: 298 LRTPSERMDAIVEAVLVKQCSGFCISHKVAVFLRSYFVCQDGTITSFIKALKIACAQHFS 357
             T SERMDAIVEAVLVKQCSGF I HKVAVFLR+YFV  DGT+TSFI+ALKIACAQHFS
Sbjct: 296 FGTLSERMDAIVEAVLVKQCSGFSIGHKVAVFLRNYFVSHDGTLTSFIRALKIACAQHFS 355

Query: 358 MESLSFILPWFXXXXXXXXXXXXNYGLSPEIVLKRAFDLPSCRRNKMAEQNGDILVHGLS 417
           ME LSF+L WF            NYGLSPE + K AF+LPSC R KM EQNGD LVHGLS
Sbjct: 356 MEPLSFMLLWF-LEEDNKVLHGENYGLSPENMCKHAFELPSCLRKKMVEQNGDTLVHGLS 414

Query: 418 ELKKLQKQWSTIVMCLYEVVXXXXXXXXXXXXEALDPELGMLRVSDTHRGLQEDSIVFPT 477
           ELKKL  QWS IVMCLYE              EALDPE  M RV +  +GLQ+D +V P 
Sbjct: 415 ELKKLCSQWSNIVMCLYEAGKCDKVRLLDLFCEALDPESDMSRVCNAQKGLQKDIVVSPR 474

Query: 478 EQDLQKKYTSLRRGGIISQAMHKVRDLPAMQLWKLLK 514
            QD+  K  SL++ G I  A+ KV  +  +++ K ++
Sbjct: 475 TQDMHVKNPSLQKDGFIGCALRKVSYIRCLKVGKNIR 511