Jatropha Genome Database

JcCA0310901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310901.10 + phase: 0 
         (244 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008700 conserved hypothetical protein                          282   9e-77
28694.m000668 conserved hypothetical protein                           71   5e-13
28641.m000086 conserved hypothetical protein                           64   6e-11
30055.m001626 conserved hypothetical protein                           50   9e-07
29794.m003315 conserved hypothetical protein                           50   9e-07

>30174.m008700 conserved hypothetical protein
          Length = 243

 Score =  282 bits (722), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 155/245 (63%), Positives = 184/245 (75%), Gaps = 11/245 (4%)

Query: 6   QRQPMNPVLQKPPGYKDPSKPVPRPLP--RKAVLPPAFQPRKVRRT----CCGRIWCIVY 59
           Q Q M P+LQKPPG++DPSKPVPRP P  RKA LPP+FQPRK R+     CC RI  I+ 
Sbjct: 4   QEQAMKPILQKPPGFRDPSKPVPRPPPPLRKAALPPSFQPRKRRKNYGGMCC-RILVIIS 62

Query: 60  VSVAAXXXXXXXXXXXXXXWFDPKSPAFHVQSFKISTFDIATKTDGTYLNAATVARVEVR 119
            +V                WFDPK P FH+QSFKIS+F + TK DGTYLNAATVARVEVR
Sbjct: 63  FTVLLILFILGGVFYL---WFDPKLPVFHLQSFKISSFRVTTKPDGTYLNAATVARVEVR 119

Query: 120 NPNPRLTYRYGVSEVEITVGKEQQTELGSTSLAGFIQAKKNTTSLKIATRVKNAVIEDGV 179
           NPN +LTYRY  S+V++T+G++Q T+LGS SL GF+Q KKNTTS KI   VKN +IEDGV
Sbjct: 120 NPNSKLTYRYSESQVQMTLGQDQGTQLGSMSLPGFLQDKKNTTSFKIQMSVKNELIEDGV 179

Query: 180 GSRLKSHFKSRSMVVNLRAKTTVGLGVMKGLEIGMLGLDVLCDGITLKEIDGGNMPKCTI 239
           GSRLKS FKSR +VVN++  T VG+ V +GLEIGMLG+DV CDGITLK+IDG +MPKC+I
Sbjct: 180 GSRLKSQFKSRKLVVNVQVTTKVGVDV-QGLEIGMLGVDVSCDGITLKQIDGDDMPKCSI 238

Query: 240 RTLKW 244
            TLKW
Sbjct: 239 HTLKW 243


>28694.m000668 conserved hypothetical protein
          Length = 263

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 20/205 (9%)

Query: 24  SKPVPRPLPRKAVLPPAFQPRKVRRTCCGRIWCIVYVSVAAXXXXXXXXXXXXXXW--FD 81
           S+P  RP P++         R  RR  C   +C ++V++                +  + 
Sbjct: 42  SRPAYRPQPQRK--------RSRRRCFC---FCCIWVTIIILTLILLAAIAGAILYVIYR 90

Query: 82  PKSPAFHVQSFKISTFDIATKTDGTYLNAATVARVEVRNPNPRLTYRYGVSEVEITVGKE 141
           P  P F V +FK+S+ ++   T  ++L+      +  +NPN +L Y Y    + +T  K+
Sbjct: 91  PHRPTFTVSAFKVSSLNL---TSTSHLSTNINMNITTKNPNKKLVYIYNPVTISVTTAKD 147

Query: 142 QQTELGSTSLAGFIQAKKNTTSLKIATRVKNA-VIEDGVGSRLKSHFKSRSMV-VNLRAK 199
               +G+  L  F+   KNTT LK +    N   ++D   S+LKS  KS+S V + +  +
Sbjct: 148 DIV-IGNGLLPSFVHGAKNTTLLKGSITSSNTQQLDDASASQLKSDLKSKSGVGLKIGLE 206

Query: 200 TTVGLGVMKGLEIGMLGLDVLCDGI 224
           T V L  ++GL+   +G+ V C+GI
Sbjct: 207 TKVKLK-LEGLKTPKVGIRVTCEGI 230


>28641.m000086 conserved hypothetical protein
          Length = 287

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 14/163 (8%)

Query: 85  PAFHVQSFKISTFDIATKTDGTYLNAATVARVEVRNPNPRLTYRYGVSEVEITVGKEQQT 144
           P F+V         +A++ +  +L+A    R++  N N  +   Y  SE+++ V  E   
Sbjct: 131 PEFYVLRMDFPKLHLASENNELFLDADVHIRIQALNINEEVELEY--SELKVQVSSED-I 187

Query: 145 ELGSTSLAGFIQAKKNTTSLKIATRVKNAVIEDGVGSRLKSHFKSRSMVVNLRAKTTVGL 204
            LG T + GF Q  K+ T L++ TRV N+   +     LK + ++R  VV++     +G 
Sbjct: 188 PLGETKIPGFSQNPKDKTVLRMRTRVWNSPANEDDAKALKENAENRQTVVDILLNGNIGF 247

Query: 205 GVMKGLEIGMLGLD-----VLCDGITLKEIDGGNMPKCTIRTL 242
            V      G++ L+     + C  I   E+D    PKC ++  
Sbjct: 248 HV------GVVKLNWVPALIACQKIKQAEVDFAQKPKCNVKIF 284


>30055.m001626 conserved hypothetical protein
          Length = 239

 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 63/147 (42%), Gaps = 10/147 (6%)

Query: 82  PKSPAFHVQSFKISTFDIATKTDGTYLNAATVARVEVRNPNPRLTYRYGVSEVEITVGKE 141
           P  P FH+ SF IS F+I+  +    L A   AR +V NPN +L   Y   +  +     
Sbjct: 80  PHRPQFHITSFSISNFNISASSQR--LTANWNARFQVYNPNKKLKISY---DNIVCSLLL 134

Query: 142 QQTELGSTSLAGFIQAKKNTTSLKIATRVKNAVIEDGVGSRLKSHFKSR-SMVVNLRAKT 200
           +   L  T +    Q  KN TSL  +    +  ++D V   LK    +R ++  N+R   
Sbjct: 135 KSELLSQTRIPPLYQDTKNLTSLDASFSALDTYVDDRV---LKDINAARPTLAFNVRLMA 191

Query: 201 TVGLGVMKGLEIGMLGLDVLCDGITLK 227
            VG  V  G       L V CD + L 
Sbjct: 192 DVGFKV-GGFRARHRLLRVWCDNVPLS 217


>29794.m003315 conserved hypothetical protein
          Length = 272

 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 6/149 (4%)

Query: 80  FDPKSPAFHVQSFKISTFDIATKTDGTYLNAATVARVEV--RNPNPRLTYRYGVSEVEIT 137
           + P  PAF + S +I   ++ T  D +  + +T+  + +  +NPN  LT+ Y    +  +
Sbjct: 93  YRPHRPAFSIPSLRIHRLNLTTSADSSSSHVSTLLNLTLISKNPNSHLTFFYDSFAIS-S 151

Query: 138 VGKEQQTELGSTSLAGFIQAKKNTTSLK-IATRVKNAVIEDGVGSRLKSHFKSRSMVVNL 196
           +  +    LG+ ++  +   KKN TS + +     N +  + V + L+S  K +S  V L
Sbjct: 152 LSSDGDVFLGNGTIPAYTLGKKNETSFRNVVVSGSNDLDAESVNA-LRSDLKKKSGGVAL 210

Query: 197 RAKTTVGLGV-MKGLEIGMLGLDVLCDGI 224
           + +    + + M GL+   +G+ V CDGI
Sbjct: 211 KIELDTKVKLKMGGLKTKKVGIRVTCDGI 239