Jatropha Genome Database

JcCA0310831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310831.20 - phase: 0 
         (569 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30146.m003439 RNA m5u methyltransferase, putative                     891   0.0  
28076.m000420 RNA m5u methyltransferase, putative                      90   3e-18

>30146.m003439 RNA m5u methyltransferase, putative
          Length = 577

 Score =  891 bits (2302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/575 (77%), Positives = 481/575 (83%), Gaps = 6/575 (1%)

Query: 1   MPTNTLRHLPATHLWLHRLNKLQKLHSSASLSPSPFXXXXXXXXXXXXXXXX-----XXX 55
           M   TL+HL A H WLHR  KL KLHS AS+SPS F                        
Sbjct: 3   MQIYTLKHLTANHPWLHRFQKLHKLHSLASISPSSFTQDDSQQQHQNYQEERIKDTPETR 62

Query: 56  XLSNSDKNIKNDIVESIGVNNNSNSFFPKRGQTLELVCESLAFKGKGVCKVPDTGFVLMC 115
             +      K D +E    ++ S + FPKRGQ+LELVCESLAFKGKGVCKV DTGFV+MC
Sbjct: 63  LNNKKKNKNKKDSIELNADSSKSGALFPKRGQSLELVCESLAFKGKGVCKVADTGFVVMC 122

Query: 116 DRALPGERFIGRVTRRKGSYAEVTKVKTLSPHLDIVDAPCEYAAYCGGCKTQNLVYEAQL 175
           DRALPGERFIGRVTRRKGSYAEVTKVKT+SPH DI++APCEYA+YCGGCKTQNL YEAQ+
Sbjct: 123 DRALPGERFIGRVTRRKGSYAEVTKVKTISPHWDIIEAPCEYASYCGGCKTQNLSYEAQV 182

Query: 176 KAKEQQVHGLVVNVGKFSDKDPEFYSIMKPIVPCDFQFHYRNKMEFSFGPQKWLPKELIG 235
           +AKE QV  LV+N+GKFSD DPEF SIMKPIVPCD +FHYRNKMEFSFG +KWLP+EL+G
Sbjct: 183 RAKELQVRELVINIGKFSDIDPEFVSIMKPIVPCDVKFHYRNKMEFSFGSKKWLPRELLG 242

Query: 236 EKQEGSESYALGLHAPGFFDKVLNVDGCLLQSEPANTVLATVQDCWRDS-VGLTPYNVYS 294
           EKQ+GS +YALGLHAPG FDKVLNVD CLLQSEPANTVLATVQDCWRDS  GLTPY+V+S
Sbjct: 243 EKQDGSVNYALGLHAPGCFDKVLNVDKCLLQSEPANTVLATVQDCWRDSQFGLTPYDVHS 302

Query: 295 HAGFLKHLMLRTGRNAESGSLELMVNFVTSSYKPELLKPLMEKISAIPEXXXXXXXXXXX 354
           H GFLKHLMLRTGRN E+G LELMVNFVTS+YKPELLK ++EKISAIPE           
Sbjct: 303 HDGFLKHLMLRTGRNTETGLLELMVNFVTSAYKPELLKIIVEKISAIPEVVSIVNNVNSS 362

Query: 355 XXXXXXXEEEYTLYGKSTITEVLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDG 414
                  EEEYT+YGKSTITE+LRGLTFQISANSFFQTNT QAEVLYKLIEDCAGLRGDG
Sbjct: 363 VGNTSVGEEEYTIYGKSTITEILRGLTFQISANSFFQTNTRQAEVLYKLIEDCAGLRGDG 422

Query: 415 SEIVLDLFCGTGTIGLTLARGAKHVYGYEVVPQAISDAFRNAELNGITNATFVQGDLNKI 474
           SEIVLDLFCGTGTIGLTLA  AKHVYGYEVVPQAISDA RNAELNGITNATFVQGDLNKI
Sbjct: 423 SEIVLDLFCGTGTIGLTLAGRAKHVYGYEVVPQAISDARRNAELNGITNATFVQGDLNKI 482

Query: 475 GENFGNNFPKPDVVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 534
            ++FGNNFPKPD+VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV
Sbjct: 483 SDSFGNNFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 542

Query: 535 KEQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELC 569
           +EQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELC
Sbjct: 543 EEQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELC 577


>28076.m000420 RNA m5u methyltransferase, putative
          Length = 863

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 121/294 (41%), Gaps = 57/294 (19%)

Query: 215 YRNKMEFSFGPQKWLPKELIGEKQEGSESYALGLHAPGFFDKVLNVD---GCLLQSEPAN 271
           YRNK EFS G      K ++G        + LG     F D V  V+    C   S  A+
Sbjct: 376 YRNKCEFSVG-YSLQGKPIVG--------FMLG----NFRDGVTAVEEPMDCPNVSSIAS 422

Query: 272 TVLATVQDCWRDSVGLTPYNVYSHAGFLKHLMLRTGRNAESGS----------LELMVNF 321
                 Q+  ++S GL  +N + + GF + L +R GR  E  +          + L+V  
Sbjct: 423 KYALIFQEFLQES-GLPIWNRFKNTGFWRQLTVREGRLPEKDADIKGDVNMSEIMLIVQV 481

Query: 322 VTSSYKPELLK---------------------PLM-------EKISAIPEXXXXXXXXXX 353
             + +  EL+                      PL        + IS +            
Sbjct: 482 CLAGFDDELINSELWRLAHAFTTGAAANSPPLPLKVLVLQDHQGISNVAPADAPLRILPL 541

Query: 354 XXXXXXXXEEEYTLYGKSTITEVLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGD 413
                    E      ++ I + +  L F IS  +FFQ NT  AE LY L  D AGL  D
Sbjct: 542 PNVESSSEAEATKNVVEARIHDHINNLRFSISPTAFFQVNTLAAERLYSLAGDWAGLGPD 601

Query: 414 GSEIVLDLFCGTGTIGLTLARGAKHVYGYEVVPQAISDAFRNAELNGITNATFV 467
              ++ D+ CGTGTIGLTLA     V G E+   A+SDA RNAE+NGI N  F+
Sbjct: 602 --TLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDAHRNAEINGIRNCRFI 653