Jatropha Genome Database

JcCA0310831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310831.10 - phase: 0 /pseudo/partial/short
         (41 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29616.m000214 conserved hypothetical protein                           53   3e-08
29680.m001734 conserved hypothetical protein                           53   4e-08
28842.m000950 conserved hypothetical protein                           51   1e-07

>29616.m000214 conserved hypothetical protein
          Length = 401

 Score = 52.8 bits (125), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 27/32 (84%)

Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
          ++  DGD+IDC+ I  QPAF+HPLLK+HKIQ+
Sbjct: 34 IKSPDGDIIDCIHISHQPAFNHPLLKDHKIQM 65


>29680.m001734 conserved hypothetical protein
          Length = 439

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/33 (66%), Positives = 24/33 (72%)

Query: 8  LVLQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQ 40
          + +Q  DGD IDCV   KQPA  HPLLKNHKIQ
Sbjct: 63 MTVQSPDGDTIDCVHKRKQPALDHPLLKNHKIQ 95


>28842.m000950 conserved hypothetical protein
          Length = 412

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 25/32 (78%)

Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
          ++  DGD+IDCV +  QPAF HP LK+HKIQ+
Sbjct: 52 IESSDGDIIDCVPMAHQPAFDHPFLKDHKIQM 83