Jatropha Genome Database

JcCA0310371.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310371.20 + phase: 0 /partial
         (520 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29912.m005583 1-deoxyxylulose-5-phosphate synthase, putative          937   0.0  
29726.m003963 1-deoxyxylulose-5-phosphate synthase, putative          592   e-169
29235.m000235 1-deoxyxylulose-5-phosphate synthase, putative          566   e-162
27506.m000052 1-deoxyxylulose-5-phosphate synthase, putative          562   e-160

>29912.m005583 1-deoxyxylulose-5-phosphate synthase, putative
          Length = 717

 Score =  937 bits (2422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/520 (86%), Positives = 471/520 (90%)

Query: 1   GFVSRICSVPDLDDIFWEKVPTPILDVVENPIHXXXXXXXXXXXXADEIRAELTSIMSST 60
           GFV RICSVPDLDDIFWEKVPTPILDVVENPIH            ADEIR EL+SIMS T
Sbjct: 54  GFVGRICSVPDLDDIFWEKVPTPILDVVENPIHLNNLTLQELKELADEIREELSSIMSRT 113

Query: 61  QKSLKASLAVVELTVAIHYIFHAPVDKILWDVGEQTYAHKILTGRRSLMHTLRQKNGLSG 120
           QK+ KASLAVVELTVAIH++FHAPVDKILWDVGEQTYAHKILTGRRSLMHTLRQKNGLSG
Sbjct: 114 QKAFKASLAVVELTVAIHHVFHAPVDKILWDVGEQTYAHKILTGRRSLMHTLRQKNGLSG 173

Query: 121 FTSRSESEYDPFGAGHGCNSISAGLGMAVARDIKGKRERVVTVISNGTTMAGQVYEAMSN 180
           FTS+SESEYDPFGAGHGCNS+SAGLGMAVARD+KGKRERVVTVISNGTTMAGQVYEAMSN
Sbjct: 174 FTSQSESEYDPFGAGHGCNSVSAGLGMAVARDMKGKRERVVTVISNGTTMAGQVYEAMSN 233

Query: 181 AGYLDSNMIVILNDSRHSLHPKIEEGPKTSITAXXXXXXXXXXXXXFRRFREVAKGVTKR 240
           AGY+DSNMIVILNDSRHSLHPKIEEGPKTS+ A             FR+FRE AKGVTKR
Sbjct: 234 AGYIDSNMIVILNDSRHSLHPKIEEGPKTSLNALSSTLSRLQSSKSFRKFREAAKGVTKR 293

Query: 241 IGMGMHELAAKVDEYARGMIGPPGSTLFEELGLYYIGPVDGHSIEDLVCVLQEVASLDSM 300
           IG GMHELAAKVDEYARGMIGP GSTLFEELGLYYIGPVDGH+IEDLVCVLQEVASLDSM
Sbjct: 294 IGRGMHELAAKVDEYARGMIGPLGSTLFEELGLYYIGPVDGHNIEDLVCVLQEVASLDSM 353

Query: 301 GPVLVHVITEENRGLEDKERSESLENLQEGSCKSDSSLYSIHTRTYSDCFVEALFMEAEK 360
           GPVL+HV+TEENR  ++K++ ++LENLQEGS  SD  LYSIHTRTYSDCFVEAL MEAEK
Sbjct: 354 GPVLIHVVTEENRRRDNKQKIDTLENLQEGSSNSDPFLYSIHTRTYSDCFVEALIMEAEK 413

Query: 361 DKDIVIVHAGMEMETAFQRIQERFPDRFFDVGMAEQHAVTFSAGLSCGGLKPFCIIPSAF 420
           DKDIVIVHAGMEMETAFQ IQER+PDRFFDVGMAEQHAVTFSAGLSCGGLKPFCIIPS F
Sbjct: 414 DKDIVIVHAGMEMETAFQLIQERYPDRFFDVGMAEQHAVTFSAGLSCGGLKPFCIIPSTF 473

Query: 421 LQRAYDQVIHDVDQQKIPVRFVIPSAGLVGSDGPMQCGAFDITFMSCLPNMIVMAPSDED 480
           LQRAYDQV+HDVDQQ+IPVRFVI SAGLVGSDGPMQCGAFDITFMSCLPNMIVMAPSDED
Sbjct: 474 LQRAYDQVVHDVDQQRIPVRFVITSAGLVGSDGPMQCGAFDITFMSCLPNMIVMAPSDED 533

Query: 481 ELVDMVATAACIDDRPVCFRYPRGAIIGTDHYTRSGIPIE 520
           ELVDMVATA  IDD PVCFRYPRGAI+GTDHY R GIPIE
Sbjct: 534 ELVDMVATAVQIDDHPVCFRYPRGAIVGTDHYMRIGIPIE 573


>29726.m003963 1-deoxyxylulose-5-phosphate synthase, putative
          Length = 720

 Score =  592 bits (1526), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 300/523 (57%), Positives = 362/523 (69%), Gaps = 11/523 (2%)

Query: 6   IC-SVPDLDDIFWEKVPTPILDVVENPIHXXXXXXXXXXXXADEIRAELTSIMSSTQKSL 64
           +C S+ +  +   ++ PTP+LD +  PIH            +DE+R+++   +S T   L
Sbjct: 56  VCASLSETGEYHSQRPPTPLLDTINYPIHMKNLSIKELKQLSDELRSDVIFNVSITGGHL 115

Query: 65  KASLAVVELTVAIHYIFHAPVDKILWDVGEQTYAHKILTGRRSLMHTLRQKNGLSGFTSR 124
            +SL VVELTVA+HY+F+AP DKILWDVG Q+Y HKILTGRR  M T+RQ NGLSGFT R
Sbjct: 116 GSSLGVVELTVALHYVFNAPQDKILWDVGHQSYPHKILTGRRDKMQTMRQTNGLSGFTKR 175

Query: 125 SESEYDPFGAGHGCNSISAGLGMAVARDIKGKRERVVTVISNGTTMAGQVYEAMSNAGYL 184
           SESEYD FG GH   +ISAGLGMAV RD+KG++  VV VI +G   AGQ YEAM+NAGYL
Sbjct: 176 SESEYDCFGTGHSSTTISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYL 235

Query: 185 DSNMIVILNDSRHSLHPKIE-EGPKTSITAXXXXXXXXXXXXXFRRFREVAKGVTKRIGM 243
           DS+MIVILND++    P    +GP   + A              R  REVAKGVTKRIG 
Sbjct: 236 DSDMIVILNDNKQVSLPTANLDGPIPPVGALSSALSRLQSNKPLRELREVAKGVTKRIGG 295

Query: 244 GMHELAAKVDEYARGMIGPPGSTLFEELGLYYIGPVDGHSIEDLVCVLQEVASLDSMGPV 303
            MHELAAKVDEYARGMI   GSTLFEELGLYYIGPVDGH+++DLV +L+EV S  + GPV
Sbjct: 296 PMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILKEVKSTKTTGPV 355

Query: 304 LVHVITEENRGLEDKERSESLENLQEGSCKSDSSLY-----SIHTRTYSDCFVEALFMEA 358
           L+HV+TE+ RG    E++    +   G  K D +       S  T++Y+  F EAL  EA
Sbjct: 356 LIHVVTEKGRGYPYAEKAA---DKYHGVTKFDPATGKQFKGSASTQSYTTYFAEALIAEA 412

Query: 359 EKDKDIVIVHAGMEMETAFQRIQERFPDRFFDVGMAEQHAVTFSAGLSCGGLKPFCIIPS 418
           E DKD+V +HA M   T       RFP R FDVG+AEQHAVTF+AGL+C GLKPFC I S
Sbjct: 413 EVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYS 472

Query: 419 AFLQRAYDQVIHDVDQQKIPVRFVIPSAGLVGSDGPMQCGAFDITFMSCLPNMIVMAPSD 478
           +F+QRAYDQV+HDVD QK+PVRF +  AGLVG+DGP  CGAFD+TFM+CLPNM+VMAPSD
Sbjct: 473 SFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVMAPSD 532

Query: 479 EDELVDMVATAACIDDRPVCFRYPRGAIIGTD-HYTRSGIPIE 520
           E EL  MVATAA IDDRP CFRYPRG  IG        GIP+E
Sbjct: 533 EAELFHMVATAAAIDDRPSCFRYPRGNGIGVQLPPGNKGIPLE 575


>29235.m000235 1-deoxyxylulose-5-phosphate synthase, putative
          Length = 714

 Score =  566 bits (1460), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 281/497 (56%), Positives = 345/497 (69%), Gaps = 9/497 (1%)

Query: 18  EKVPTPILDVVENPIHXXXXXXXXXXXXADEIRAELTSIMSSTQKSLKASLAVVELTVAI 77
           EK  TP+LD +  P+H            A E+RA++   +S T   L +SL VVEL+VA+
Sbjct: 65  EKPATPLLDTINYPVHMKNLSVQDLEQLAAELRADIVHSVSKTGGHLSSSLGVVELSVAL 124

Query: 78  HYIFHAPVDKILWDVGEQTYAHKILTGRRSLMHTLRQKNGLSGFTSRSESEYDPFGAGHG 137
           H++F+ P DKI+WDVG Q Y HKILTGRRS MHT+R+ +GL+GF  R ES +D FGAGH 
Sbjct: 125 HHVFNTPDDKIIWDVGHQAYPHKILTGRRSKMHTMRKTSGLAGFPKRDESVHDAFGAGHS 184

Query: 138 CNSISAGLGMAVARDIKGKRERVVTVISNGTTMAGQVYEAMSNAGYLDSNMIVILNDSRH 197
             SISAGLGMAVARD+ GK   V++VI +G   AGQ YEAM+NAGYLDSN+IVILND++ 
Sbjct: 185 STSISAGLGMAVARDLLGKNNHVISVIGDGAMTAGQAYEAMNNAGYLDSNLIVILNDNKQ 244

Query: 198 -SLHPKIEEGPKTSITAXXXXXXXXXXXXXFRRFREVAKGVTKRIGMGMHELAAKVDEYA 256
            SL     +GP T + A             FR+ RE AK +TK+IG   H++AAKVDEYA
Sbjct: 245 VSLPTATLDGPATPVGALSSALTKIQASTKFRKLREAAKSITKQIGGQTHQVAAKVDEYA 304

Query: 257 RGMIGPPGSTLFEELGLYYIGPVDGHSIEDLVCVLQEVASLDSMGPVLVHVITEENRGLE 316
           RGMI   GSTLFEELGLYYIGPVDGHSIEDLV + Q+V ++ + GPVL+H++TE+ +G  
Sbjct: 305 RGMISASGSTLFEELGLYYIGPVDGHSIEDLVTIFQKVKAMPAPGPVLIHIVTEKGKGYP 364

Query: 317 DKERSESLENLQEGSCKSDSSL-----YSIHTRTYSDCFVEALFMEAEKDKDIVIVHAGM 371
               +E+  +   G  K D            T +Y+  F EAL  EAE D  IV +HA M
Sbjct: 365 P---AEAAADKMHGVVKFDVETGKQFKQKSSTLSYTQYFAEALIKEAEVDNKIVAIHAAM 421

Query: 372 EMETAFQRIQERFPDRFFDVGMAEQHAVTFSAGLSCGGLKPFCIIPSAFLQRAYDQVIHD 431
              T     Q+RFPDR FDVG+AEQHAVTF+AGL+  GLKPFC I S+FLQR YDQV+HD
Sbjct: 422 GGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLATEGLKPFCAIYSSFLQRGYDQVVHD 481

Query: 432 VDQQKIPVRFVIPSAGLVGSDGPMQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATAAC 491
           VD QK+PVRF +  AGLVG+DGP  CGAFDIT+M+CLPNM+VMAPSDE EL+ MVATAA 
Sbjct: 482 VDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAAA 541

Query: 492 IDDRPVCFRYPRGAIIG 508
           IDDRP CFR+PRG  IG
Sbjct: 542 IDDRPSCFRFPRGNGIG 558


>27506.m000052 1-deoxyxylulose-5-phosphate synthase, putative
          Length = 728

 Score =  562 bits (1448), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 276/494 (55%), Positives = 344/494 (69%), Gaps = 3/494 (0%)

Query: 19  KVPTPILDVVENPIHXXXXXXXXXXXXADEIRAELTSIMSSTQKSLKASLAVVELTVAIH 78
           K  TP+LD V  PIH            ADE+R E+  ++S T   L +SL V ELTVA+H
Sbjct: 78  KPATPVLDTVNYPIHMNNLSVQDLEVLADELREEIVYVVSKTGGHLSSSLGVAELTVALH 137

Query: 79  YIFHAPVDKILWDVGEQTYAHKILTGRRSLMHTLRQKNGLSGFTSRSESEYDPFGAGHGC 138
           ++F+ P D+I+WDVG Q Y HKILTGRRS M ++RQ  GL+GF  R ESE+D FGAGH  
Sbjct: 138 HVFNTPDDRIIWDVGHQAYPHKILTGRRSKMSSIRQTFGLAGFPKRDESEHDAFGAGHSS 197

Query: 139 NSISAGLGMAVARDIKGKRERVVTVISNGTTMAGQVYEAMSNAGYLDSNMIVILNDSRH- 197
            SISAGLGMAV RD+ GK   V+ VI +G   AGQ YEAM+NAGYLDSN+I+ILND++  
Sbjct: 198 TSISAGLGMAVGRDLVGKNNHVIAVIGDGAMTAGQAYEAMNNAGYLDSNLIIILNDNKQV 257

Query: 198 SLHPKIEEGPKTSITAXXXXXXXXXXXXXFRRFREVAKGVTKRIGMGMHELAAKVDEYAR 257
           SL     +GP   + A              R+ RE AKG+TK+IG   HE+AAKVD Y R
Sbjct: 258 SLPTATVDGPAPPVGALSKALTKLQSSRKIRQLREAAKGITKQIGGQTHEIAAKVDTYVR 317

Query: 258 GMIGPPGSTLFEELGLYYIGPVDGHSIEDLVCVLQEVASLDSMGPVLVHVITEENRGLED 317
           GM    G++LFEELGLYYIGPVDGHS+EDLV +L++V SL + GPVL+HVITE+ +G   
Sbjct: 318 GMAAGSGASLFEELGLYYIGPVDGHSVEDLVTILKKVKSLPAPGPVLIHVITEKGKGYSP 377

Query: 318 KE-RSESLENLQEGSCKSDSSLYS-IHTRTYSDCFVEALFMEAEKDKDIVIVHAGMEMET 375
            E  ++ +  + +    S   L S  +T++Y+  F E+L  EAE+D  IV +HA M   T
Sbjct: 378 AEVAADKMHGVVKFDPTSGKQLKSKSNTKSYTQYFAESLIAEAEQDDKIVAIHAAMGGGT 437

Query: 376 AFQRIQERFPDRFFDVGMAEQHAVTFSAGLSCGGLKPFCIIPSAFLQRAYDQVIHDVDQQ 435
                Q++FP++ FDVG+AEQHAVTF+AGL+  GLKPFC I S+FLQR YDQV+HDVD Q
Sbjct: 438 GLNLFQKQFPEKCFDVGIAEQHAVTFAAGLATEGLKPFCAIYSSFLQRGYDQVVHDVDLQ 497

Query: 436 KIPVRFVIPSAGLVGSDGPMQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATAACIDDR 495
           K+PVRF I  AGLVG+DGP  CGAFD+T+M+CLPNM+VMAPSDE EL+ MVATAA IDDR
Sbjct: 498 KLPVRFAIDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDETELMHMVATAAAIDDR 557

Query: 496 PVCFRYPRGAIIGT 509
           P CFRYPRG  IGT
Sbjct: 558 PSCFRYPRGNGIGT 571