Jatropha Genome Database

JcCA0310221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310221.20 + phase: 0 
         (524 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008684 shikimate dehydrogenase, putative                      1013   0.0  
29726.m003976 shikimate dehydrogenase, putative                       711   0.0  
30128.m008685 3-dehydroquinate dehydratase, putative                  488   e-138
30128.m008683 shikimate dehydrogenase, putative                       471   e-133
29647.m002035 shikimate dehydrogenase, putative                       449   e-126
30128.m008686 shikimate dehydrogenase, putative                       197   1e-50
54724.m000014 Shikimate dehydrogenase, putative                        73   3e-13

>30128.m008684 shikimate dehydrogenase, putative
          Length = 524

 Score = 1013 bits (2618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/524 (92%), Positives = 504/524 (96%)

Query: 1   MSDLQLSNREVQSSPTLLCTPLMGTTVDQMLIEMQKAKEIGADVVEIRLDCLRNFSPTQD 60
           MSDLQLSN  VQSSPTLLCTPLMGTTVDQML+EM+KA EI ADVVEIRLDCLRN +P QD
Sbjct: 1   MSDLQLSNSSVQSSPTLLCTPLMGTTVDQMLLEMRKATEISADVVEIRLDCLRNLNPRQD 60

Query: 61  LEILIKRSPLPTLVTYRPVWEGGQYEGDETKRQDALRLAMQLGANYVDVELEVAHDFNSS 120
           LEILIK+SPLPTLVTYRP+WEGGQYEGDETKRQDALR AMQLGANYVDVELEVAH+FN+S
Sbjct: 61  LEILIKQSPLPTLVTYRPIWEGGQYEGDETKRQDALRFAMQLGANYVDVELEVAHEFNNS 120

Query: 121 IYGKKPDNFRVIVSSHNFHNTPSAEAIANLVARIQATGADIIKIATTALDITDCARIFRI 180
           IYGKKPDNF+VIVSSHNFHNTPS+EAIANLVARIQATGADI+KIATTALDITDCARIF+I
Sbjct: 121 IYGKKPDNFKVIVSSHNFHNTPSSEAIANLVARIQATGADIVKIATTALDITDCARIFQI 180

Query: 181 MVHSQIPVIGIVMGERGQISRLLSPKFGGYLTYGALEAGAISAPGQPTVKDLLDLYNFRL 240
           MVH Q+PVIGIVMGERG ISRLLSPKFGGYLTYGALEAGAISAPGQPT KDLLDLYNFRL
Sbjct: 181 MVHCQVPVIGIVMGERGLISRLLSPKFGGYLTYGALEAGAISAPGQPTAKDLLDLYNFRL 240

Query: 241 IRPDTKVYGIIGKPVGHSKSPLLFNAAFKSVGLNAVYMHFLVDDVEKFFNTYSSVDFASG 300
           IRPDTKVYGIIGKPVGHSKSPLLFNAAFKSVGLNAVY+HFLVDDVEKFF+TYSSVDFASG
Sbjct: 241 IRPDTKVYGIIGKPVGHSKSPLLFNAAFKSVGLNAVYVHFLVDDVEKFFSTYSSVDFASG 300

Query: 301 CSCTIPHKEVALKCMDEIDPIARKIGAINNIVRRPDGTLMAYNTDYIGAISAIEDGLREL 360
           CSCTIPHKEVALKCMDEIDPIA+KIGAINNI+RRPD TLMAYNTDYIGAI AIEDGLREL
Sbjct: 301 CSCTIPHKEVALKCMDEIDPIAKKIGAINNIIRRPDATLMAYNTDYIGAIDAIEDGLREL 360

Query: 361 NGAVPAGTSPLKGKLFVVLGAGGAGKSLAYGAAQKGARVVVANRTYERAKELADKVGGQA 420
           NGAVPAGTSPL GKLFVVLGAGGAGKSLAYGAAQKGARVVVANRT+ERAKELADKV GQA
Sbjct: 361 NGAVPAGTSPLAGKLFVVLGAGGAGKSLAYGAAQKGARVVVANRTFERAKELADKVNGQA 420

Query: 421 MTLAEAEHFHPEDGMVLANTTSVGMKPNYDATPLPKHVLKHYCLAFDAIYTPKDTRLLRE 480
           MTL E ++FHPE+GMVLANTTSVGMKPN DATPL KH LKHYC+ FDAIYTPKDTRLLRE
Sbjct: 421 MTLDEVQNFHPEEGMVLANTTSVGMKPNIDATPLAKHALKHYCVVFDAIYTPKDTRLLRE 480

Query: 481 AKESGAVIVYGTEMLIRQGFEQYKNFTGLPAPEELFRQLMEKHA 524
           AKESGAVIVYGTEMLIRQGFEQYKNFTGLPAPEELFRQLMEKHA
Sbjct: 481 AKESGAVIVYGTEMLIRQGFEQYKNFTGLPAPEELFRQLMEKHA 524


>29726.m003976 shikimate dehydrogenase, putative
          Length = 539

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/526 (67%), Positives = 423/526 (80%), Gaps = 5/526 (0%)

Query: 2   SDLQLSNREV---QSSPTLLCTPLMGTTVDQMLIEMQKAKEIGADVVEIRLDCLRNFSPT 58
           +D ++ +R V   + +PTL+C P+M  +VD+MLI + KAKE GAD+VEIRLD L+ F+ +
Sbjct: 15  TDAEMGSRGVGGLRKNPTLICAPIMADSVDKMLINLVKAKENGADLVEIRLDSLKTFNAS 74

Query: 59  QDLEILIKRSPLPTLVTYRPVWEGGQYEGDETKRQDALRLAMQLGANYVDVELEVAHDFN 118
            D++ LI RSPLPTL TYRP WEGG+Y+GDE +R DALRLAM+LGA+Y+DVEL+VAH FN
Sbjct: 75  DDIKTLITRSPLPTLFTYRPKWEGGEYDGDENERLDALRLAMELGADYIDVELKVAHKFN 134

Query: 119 SSIYGKKPDNFRVIVSSHNFHNTPSAEAIANLVARIQATGADIIKIATTALDITDCARIF 178
            SI G KP   +VIVSSHN+HNTPS E + NLVA IQA GADI+KIATTALDITD ARIF
Sbjct: 135 DSIRGNKPAKCKVIVSSHNYHNTPSVEDLGNLVADIQAAGADIVKIATTALDITDVARIF 194

Query: 179 RIMVHSQIPVIGIVMGERGQISRLLSPKFGGYLTYGALEAGAISAPGQPTVKDLLDLYNF 238
           +I VHSQ+P+IGIVMGERG ISR+L  KFGGYLT+G LE+G +SAPGQP +KDLLDLYNF
Sbjct: 195 QITVHSQVPIIGIVMGERGLISRILCAKFGGYLTFGTLESGIVSAPGQPMIKDLLDLYNF 254

Query: 239 RLIRPDTKVYGIIGKPVGHSKSPLLFNAAFKSVGLNAVYMHFLVDDVEKFFNTYSSVDFA 298
           R I PDTKVYGIIGKPVGHSKSP+L+N AFKSVG N VY+H LVDD+  F  T+SS DFA
Sbjct: 255 RQIGPDTKVYGIIGKPVGHSKSPVLYNEAFKSVGFNGVYVHLLVDDIASFLQTFSSTDFA 314

Query: 299 SGCSCTIPHKEVALKCMDEIDPIARKIGAINNIVRRP-DGTLMAYNTDYIGAISAIEDGL 357
            G SCTIPHKE A+ C D ID +AR IGA+N I+RR  DG L  YNTDY GAI+AIE+GL
Sbjct: 315 -GFSCTIPHKEAAVDCCDGIDSVARSIGAVNCIIRRQRDGKLFGYNTDYDGAITAIEEGL 373

Query: 358 RELNGAVPAGTSPLKGKLFVVLGAGGAGKSLAYGAAQKGARVVVANRTYERAKELADKVG 417
           R       A  SPL GKLFVV+GAGGAGK+LAYGA QKGA+VV+ANRTYERAK LAD VG
Sbjct: 374 RVSQNISGAADSPLAGKLFVVIGAGGAGKALAYGAKQKGAKVVIANRTYERAKGLADAVG 433

Query: 418 GQAMTLAEAEHFHPEDGMVLANTTSVGMKPNYDATPLPKHVLKHYCLAFDAIYTPKDTRL 477
           G A+ LA+  +F PE GMVLANTTS+GM+P  + TP+PKH L++Y L FDA+YTPK TRL
Sbjct: 434 GVAIALADLGNFRPESGMVLANTTSIGMQPKVEETPIPKHALRNYSLVFDAVYTPKITRL 493

Query: 478 LREAKESGAVIVYGTEMLIRQGFEQYKNFTGLPAPEELFRQLMEKH 523
           LREA+ESGA  V G EM I Q +EQ++NFTGLPAP+ELFR++M KH
Sbjct: 494 LREAEESGAATVSGLEMFIGQAYEQFENFTGLPAPKELFRKIMSKH 539


>30128.m008685 3-dehydroquinate dehydratase, putative
          Length = 368

 Score =  488 bits (1256), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 228/358 (63%), Positives = 299/358 (83%), Gaps = 3/358 (0%)

Query: 2   SDLQLSNREVQSSPTLLCTPLMGTTVDQMLIEMQKAKEIGADVVEIRLDCLRNFSPTQDL 61
           +DLQ+++   ++S TL+C P+M  +VD ML+++ KAKE+GAD+VEIR+D L NFSP QDL
Sbjct: 11  ADLQIADGGRRNS-TLICAPVMAKSVDGMLVQINKAKELGADLVEIRVDFLENFSPIQDL 69

Query: 62  EILIKRSPLPTLVTYRPVWEGGQYEGDETKRQDALRLAMQLGANYVDVELEVAHDFNSSI 121
           EILIK+S LPTL+TYRP WE G+Y+GDE+KRQ+ALRLA++LG++++DVEL+VA +F +SI
Sbjct: 70  EILIKQSALPTLITYRPKWEVGEYDGDESKRQEALRLAIELGSDFIDVELKVAPEFFNSI 129

Query: 122 YGKKPDNFRVIVSSHNFHNTPSAEAIANLVARIQATGADIIKIATTALDITDCARIFRIM 181
            GKKP+  ++IVSSHN+ NTPS E IANLVA+IQ+TGADI+K+ATTALDITD AR+F+++
Sbjct: 130 QGKKPEKVKIIVSSHNYENTPSVEEIANLVAKIQSTGADIVKVATTALDITDNARMFQVL 189

Query: 182 VHSQIPVIGIVMGERGQISRLLSPKFGGYLTYGALEAGAISAPGQPTVKDLLDLYNFRLI 241
           VH+Q+P+IGIVM ERG +SR+L+ KFGG+LT+G++EAG +SAPGQPT+ DLLDLYN R I
Sbjct: 190 VHAQVPMIGIVMAERGLMSRILAAKFGGFLTFGSIEAGVVSAPGQPTITDLLDLYNLRQI 249

Query: 242 RPDTKVYGIIGKPVGHSKSPLLFNAAFKSVGLNAVYMHFLVDDVEKFFNTYSSVDFASGC 301
             DTKV+G+IG P+GHSKSP L+N+AFKSV  N +Y+  LVD+V  + +TYSS DF  G 
Sbjct: 250 GADTKVHGVIGNPIGHSKSPHLYNSAFKSVRFNGIYLPLLVDNVANYISTYSSSDFV-GY 308

Query: 302 SCTIPHKEVALKCMDEIDPIARKIGAINNIVRRP-DGTLMAYNTDYIGAISAIEDGLR 358
           S TIPHKE  LKC DE+DPIA+ IGAI+ ++RRP DG LM YN DY+GAI AIE+ LR
Sbjct: 309 SYTIPHKEAGLKCCDEVDPIAQAIGAISCMIRRPSDGKLMGYNVDYLGAIGAIEEALR 366


>30128.m008683 shikimate dehydrogenase, putative
          Length = 519

 Score =  471 bits (1212), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/512 (48%), Positives = 345/512 (67%), Gaps = 8/512 (1%)

Query: 13  SSPTLLCTPLMGTTVDQMLIEMQKAKEIGADVVEIRLDCLRNFSPTQDLEILIKRSPLPT 72
           +S  ++CTPLM  +V+QM+ +M  AK  GADVVE+RLD + NF P QDL+ +++  PLP 
Sbjct: 8   TSSVMVCTPLMAQSVEQMISDMYNAKTQGADVVEVRLDYIDNFQPPQDLQAILRNKPLPV 67

Query: 73  LVTYRPVWEGGQYEGDETKRQDALRLAMQLGANYVDVELEVAHDFNSSIYGKKPDNFRVI 132
           ++ YRP  EGG YEGDE  R +ALRLA  LGA+YVD EL+VA D    + G      +VI
Sbjct: 68  IIVYRPKSEGGLYEGDEPTRLEALRLAYVLGADYVDFELKVASDLIGELKGTHHTGSKVI 127

Query: 133 VSSHNFHNTPSAEAIANLVARIQATGADIIKIATTALDITDCARIFRIMVHSQIPVIGIV 192
           VS +   + P+ E ++ LVA +QATGADIIK+ +TA +IT+  RIF +++H Q+P+I   
Sbjct: 128 VSCYVNGDMPTKENLSQLVASMQATGADIIKLVSTANNITELDRIFHLILHCQVPIIAYS 187

Query: 193 MGERGQISRLLSPKFGGYLTYGALEAGAISAPGQPTVKDLLDLYNFRLIRPDTKVYGIIG 252
           +GERG IS+LLSPKFGG L YG++E  +I  PG PT+  L + Y    I  DTKV+G++ 
Sbjct: 188 VGERGLISQLLSPKFGGSLLYGSMEGSSI--PGLPTLDSLREAYKVAYINSDTKVFGLVS 245

Query: 253 KPVGHSKSPLLFNAAFKSVGLNAVYMHFLVDDVEKFFNTYSSVDFASGCSCTIPHKEVAL 312
           KPV HSK PLL N  F+    N  Y+   VDD+++FF+ YSS DFA G S   P+KE  +
Sbjct: 246 KPVSHSKGPLLHNPTFRHANYNGTYVPMFVDDLKEFFSVYSSPDFA-GFSVGFPYKEAVV 304

Query: 313 KCMDEIDPIARKIGAINNIVRRP-DGTLMAYNTDYIGAISAIEDGLRE---LNGAVPAGT 368
           +  DE+ P+A+ IGA+N I+RRP DG L+ +NTD   AI+AIED L+E   ++G   +  
Sbjct: 305 EFCDEVHPLAKSIGAVNTIIRRPGDGKLIGHNTDCEAAITAIEDALKEQGYMDGRT-SSN 363

Query: 369 SPLKGKLFVVLGAGGAGKSLAYGAAQKGARVVVANRTYERAKELADKVGGQAMTLAEAEH 428
           SPL G+ FV++GAGGAG++LA+GA  +GAR+V+ +   ERAK LAD V G+A       +
Sbjct: 364 SPLTGRQFVLVGAGGAGRALAFGAKSRGARIVIFDIDLERAKFLADAVSGEAQLFENVVN 423

Query: 429 FHPEDGMVLANTTSVGMKPNYDATPLPKHVLKHYCLAFDAIYTPKDTRLLREAKESGAVI 488
           F PE+G +LAN T +GM PN +  P+ +  L  Y L FDA+YTP+ TRLL+EA+ +GA+I
Sbjct: 424 FEPENGAILANATPIGMHPNTERIPVAEATLGIYQLVFDAVYTPRKTRLLKEAEAAGAII 483

Query: 489 VYGTEMLIRQGFEQYKNFTGLPAPEELFRQLM 520
           V G EM +RQ   Q+  FTG  AP E  R+++
Sbjct: 484 VSGVEMFLRQAMGQFSLFTGREAPTEFMREIV 515


>29647.m002035 shikimate dehydrogenase, putative
          Length = 515

 Score =  449 bits (1156), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/510 (48%), Positives = 339/510 (66%), Gaps = 12/510 (2%)

Query: 17  LLCTPLMGTTVDQMLIEMQKAKEIGADVVEIRLDCLRNFSPTQDLEILIKRSPLPTLVTY 76
           L+CTPL   T  +ML  M+KA+  GAD+VE+R+D + +FS    +E LIK   LP +V++
Sbjct: 8   LVCTPLECETAGEMLSCMEKARGEGADLVELRVDSM-SFSHISQVEKLIKLRTLPAIVSF 66

Query: 77  RPVWEGGQYEGDETKR-QDALRLAMQLGANYVDVELEVAHDFNSSIYGKKPDNFRVIVSS 135
           RP        GD  K     L LA+ L   +V++E EVA D + + Y     + ++IVSS
Sbjct: 67  RPKTSKISSNGDSKKTCLQVLSLALDLDVEFVEMEYEVASDVSMAEYIYNRSSGKLIVSS 126

Query: 136 HNFHNTPSAEAIANLVARIQATGADIIKIATTALDITDCARIFRIMVHSQIPVIGIVMGE 195
           +     PSAE + NL+A +Q+TGAD+IK+      ITD A +F+++ H Q+P+I + +G 
Sbjct: 127 YVNGGKPSAEKLGNLIANLQSTGADVIKLVINVDYITDLAPVFKMLAHCQVPLIALAVGS 186

Query: 196 RGQISRLLSPKFGGYLTYGALEAGAISAPGQPTVKDLLDLYNFRLIRPDTKVYGIIGKPV 255
           RG IS+LL PKFGG+L YG+L   A+  PG PT+  L  +Y    I  DTKV+G+I  PV
Sbjct: 187 RGLISQLLGPKFGGFLVYGSLRDKAV--PGMPTLFSLRHVYKLEYINSDTKVFGLISNPV 244

Query: 256 GHSKSPLLFNAAFKSVGLNAVYMHFLVDDVEKFFNTYSSVDFASGCSCTIPHKEVALKCM 315
           GHSK P+L N AF+  G N +Y+   VDD+++FF TY+S DFA G S  IPHKE A+ C 
Sbjct: 245 GHSKGPILHNPAFRHTGYNGIYVPMQVDDIKEFFRTYTSTDFA-GFSVGIPHKEAAVSCC 303

Query: 316 DEIDPIARKIGAINNIVRRP-DGTLMAYNTDYIGAISAIEDGLRELN----GAVPAGTSP 370
           DE+ P+A+ IGA+N IVRRP DG L+ YNTD   +I+AIED LRE      GA+   TSP
Sbjct: 304 DEVHPLAKSIGAVNTIVRRPTDGKLVGYNTDCEASITAIEDALRERRPTNRGAL--DTSP 361

Query: 371 LKGKLFVVLGAGGAGKSLAYGAAQKGARVVVANRTYERAKELADKVGGQAMTLAEAEHFH 430
           L GK FV++GAGGAG++LA+GA+ +GARVVV NR +ERAK LA+ V G+A+     + F 
Sbjct: 362 LAGKTFVLIGAGGAGRALAFGASSRGARVVVFNRNFERAKSLANAVSGEALPYKALDRFQ 421

Query: 431 PEDGMVLANTTSVGMKPNYDATPLPKHVLKHYCLAFDAIYTPKDTRLLREAKESGAVIVY 490
            E+ M+LAN ++VGM+PN   +P+ K  LK Y L FDA+YTP++TRLL+EAKE GAV+V 
Sbjct: 422 RENDMILANASAVGMEPNTHQSPVSKEALKSYELVFDAVYTPRNTRLLQEAKEVGAVVVS 481

Query: 491 GTEMLIRQGFEQYKNFTGLPAPEELFRQLM 520
           G EM IRQ   Q++ FTG  APE   R+L+
Sbjct: 482 GVEMFIRQALGQFRLFTGGLAPEAFMRKLV 511


>30128.m008686 shikimate dehydrogenase, putative
          Length = 146

 Score =  197 bits (500), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/130 (70%), Positives = 108/130 (83%)

Query: 394 QKGARVVVANRTYERAKELADKVGGQAMTLAEAEHFHPEDGMVLANTTSVGMKPNYDATP 453
           +KGARVVVANR++++AKELA KVGGQAMTLAE + FHPE+GM+LANTTSVGMKP  D TP
Sbjct: 16  EKGARVVVANRSFDKAKELASKVGGQAMTLAELKDFHPEEGMILANTTSVGMKPRIDDTP 75

Query: 454 LPKHVLKHYCLAFDAIYTPKDTRLLREAKESGAVIVYGTEMLIRQGFEQYKNFTGLPAPE 513
           LPK  LKHY L FDAIYTPK TRLLREA+E GA  VYGTEM I Q F Q++ FTGLPAP+
Sbjct: 76  LPKEALKHYSLVFDAIYTPKLTRLLREAQECGATTVYGTEMFINQAFVQFERFTGLPAPK 135

Query: 514 ELFRQLMEKH 523
           +L R ++ K+
Sbjct: 136 QLIRDVLTKN 145


>54724.m000014 Shikimate dehydrogenase, putative
          Length = 282

 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 108/257 (42%), Gaps = 17/257 (6%)

Query: 244 DTKVYGIIGKPVGHSKSPLLFNAAFKSVGLNAVYMHFLV--DDVEKFFNTYSSVDFASGC 301
           +T++  I+G P+  +KSP LFNA F+   +NA  + F V    +         +   +G 
Sbjct: 7   ETRIVAILGDPIAQAKSPQLFNACFQRDDVNATLVPFHVPATHLGPVLEGLRGIVNLAGV 66

Query: 302 SCTIPHKEVALKCMDEIDPIARKIGAINNIVRRPDGTLMAYNTDYIGAISAIEDGLRELN 361
             T+PHK  A      +   A++ G +N + R  DG+      D  G +  +        
Sbjct: 67  VVTVPHKLQATVHAARLSEAAQQTGGVNCLRREADGSWTGAMFDGEGFVKGL-------- 118

Query: 362 GAVPAGTSPLKGKLFVVLGAGGAGKSLAYGAAQKGAR---VVVANRTYERAKELADKVGG 418
              P     ++GK  +++G GGAG ++A+     G     +  +N T  R    A +  G
Sbjct: 119 ---PGRGHGVRGKSALIVGTGGAGVAVAHALIDAGIASLDLFDSNATSLRRLAHALQKRG 175

Query: 419 QAMTLAEAEHFHPEDGMVLANTTSVGMKPNYDATPLPKHVLKHYCLAFDAIYTPKDTRLL 478
             + + E+         ++ N T  GM+P  D  P+       + +  D I  P  TRLL
Sbjct: 176 SGVVVRESVPRAQACHDLVVNATPCGMRPG-DPLPIDLADAGPHAVIADLIMKPAQTRLL 234

Query: 479 REAKESGAVIVYGTEML 495
            EA+  G     G  +L
Sbjct: 235 EEAEARGLTTHPGRHLL 251