Jatropha Genome Database

JcCA0310221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310221.10 - phase: 0 
         (260 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29939.m000532 ATP synthase subunit d, putative                        465   e-131
29176.m000138 ATP synthase subunit d, putative                        463   e-131

>29939.m000532 ATP synthase subunit d, putative
          Length = 261

 Score =  465 bits (1196), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/261 (88%), Positives = 242/261 (92%), Gaps = 1/261 (0%)

Query: 1   MSGQSQRLNVVPTVTMLAVMKARLVGATRGHALLKKKSDALTVQFRQILKKIVTAKESMG 60
           MSGQ QRLNVVPTVTMLAV+KARLVGATRGHALLKKKSDALTVQFRQILKKIV+ KESMG
Sbjct: 1   MSGQGQRLNVVPTVTMLAVVKARLVGATRGHALLKKKSDALTVQFRQILKKIVSTKESMG 60

Query: 61  DIMKSSAFALTEAKYVAGENVKHVVLENVQSASLKVRSRQENVAGVKLPKFEYFTEGETK 120
           +IMKSS+FALTEAKYVAGENVKHVVLENV +ASLKVRSRQENVAGVKLPKF+YFTEGETK
Sbjct: 61  EIMKSSSFALTEAKYVAGENVKHVVLENVHNASLKVRSRQENVAGVKLPKFDYFTEGETK 120

Query: 121 NDLTGLARGGQQVQACRAAYIKSIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKP 180
           NDLTGLARGGQQVQACRAAY+KSIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKP
Sbjct: 121 NDLTGLARGGQQVQACRAAYVKSIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKP 180

Query: 181 RIENTINYIKGELDELEREDFFRLKKVQGYKKREIERQLXXXXXXXXXXXXXXVSLQKGI 240
           R+ENTI+YIKGELDELEREDFFRLKK+QGYKKREIERQL              +SLQKGI
Sbjct: 181 RLENTISYIKGELDELEREDFFRLKKIQGYKKREIERQLAAAKQFAEEQFAEKISLQKGI 240

Query: 241 SLKSAHNLLSVA-EKDEDIIF 260
           SLKSAHN+LS A EKDEDIIF
Sbjct: 241 SLKSAHNMLSAAMEKDEDIIF 261


>29176.m000138 ATP synthase subunit d, putative
          Length = 261

 Score =  463 bits (1191), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/261 (87%), Positives = 242/261 (92%), Gaps = 1/261 (0%)

Query: 1   MSGQSQRLNVVPTVTMLAVMKARLVGATRGHALLKKKSDALTVQFRQILKKIVTAKESMG 60
           MSGQ QRLNVVPTVTMLAV+KARL+GATRGHALLKKKSDALTVQFRQILKKIV+ KESMG
Sbjct: 1   MSGQGQRLNVVPTVTMLAVVKARLIGATRGHALLKKKSDALTVQFRQILKKIVSTKESMG 60

Query: 61  DIMKSSAFALTEAKYVAGENVKHVVLENVQSASLKVRSRQENVAGVKLPKFEYFTEGETK 120
           +IMK+S+FALTEAKYVAGENVKHVVLENVQ+ASLKVRSRQENVAGVKLPKFEYFTE +TK
Sbjct: 61  EIMKASSFALTEAKYVAGENVKHVVLENVQNASLKVRSRQENVAGVKLPKFEYFTESDTK 120

Query: 121 NDLTGLARGGQQVQACRAAYIKSIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKP 180
           NDLTGLARGGQQVQACRAAY+KSIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKP
Sbjct: 121 NDLTGLARGGQQVQACRAAYVKSIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKP 180

Query: 181 RIENTINYIKGELDELEREDFFRLKKVQGYKKREIERQLXXXXXXXXXXXXXXVSLQKGI 240
           R+ENTI+YIKGELDELEREDFFRLKK+QGYKKREIERQL              +SLQKGI
Sbjct: 181 RLENTISYIKGELDELEREDFFRLKKIQGYKKREIERQLAAAKQFAEEQFAEKISLQKGI 240

Query: 241 SLKSAHNLLSVA-EKDEDIIF 260
           SLKSAHN+LS A EKDEDIIF
Sbjct: 241 SLKSAHNMLSAAMEKDEDIIF 261