Jatropha Genome Database

JcCA0310141.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310141.30 + phase: 0 /TE/partial
         (390 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29822.m003393 nuclease, putative                                       68   7e-12
59505.m000053 nuclease, putative                                       66   2e-11

>29822.m003393 nuclease, putative
          Length = 255

 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 94  LLSLESEVWEMYFDGAS--NYHGNGVGVLFKTPCGEFVPIAVKLDFDCTNNEAEYEACIK 151
           L S+ S + E  FDGAS  N    G G + +   G  V +  +     TNN AEY A I 
Sbjct: 109 LGSMSSCILE--FDGASKGNPGPAGAGAVLRAEDGSMVCLLREGLGTATNNVAEYRAVIL 166

Query: 152 GLEAALEMEIKVLRVFGDSNLIVSQALRKWKIKEERLVPYLQRLDELAQQFEELSFHYLP 211
           GL+ AL    K +RV GDSNL+V Q    WKIK + +    +   EL  +F      ++ 
Sbjct: 167 GLKHALRKGFKHIRVRGDSNLVVMQIKGLWKIKSQNVADLCKEAKELKNKFLSFQIEHVL 226

Query: 212 RAKNQFADALATLASMVNVGGDQV 235
           R  N  AD  A LA  VN+   Q+
Sbjct: 227 REFNSEADTQANLA--VNLKDGQI 248


>59505.m000053 nuclease, putative
          Length = 262

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 62/124 (50%), Gaps = 6/124 (4%)

Query: 106 FDGASNYHGN----GVGVLFKTPCGEFVPIAVKLDFDCTNNEAEYEACIKGLEAALEMEI 161
           FDGAS   GN    G G L +T  G  +    +     TNN AEY A I G++ AL+   
Sbjct: 125 FDGAS--KGNPGPAGAGALLRTTDGRIICRLREGLGQVTNNVAEYRAMILGMKYALKKGY 182

Query: 162 KVLRVFGDSNLIVSQALRKWKIKEERLVPYLQRLDELAQQFEELSFHYLPRAKNQFADAL 221
             +RV GDS L+ SQ    WK+K + +    ++  +L  +F      ++ RA N  ADA 
Sbjct: 183 TKIRVQGDSKLVCSQVQGLWKVKHKDMTNLYEQAKQLKDKFASFQISHVLRALNSEADAQ 242

Query: 222 ATLA 225
           A LA
Sbjct: 243 ANLA 246