Jatropha Genome Database

JcCA0310141.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310141.20 - phase: 2 /pseudo
         (329 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29709.m001230 carrier, putative                                       392   e-109

>29709.m001230 carrier, putative
          Length = 335

 Score =  392 bits (1006), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/240 (77%), Positives = 201/240 (83%)

Query: 90  LQELSHWNAQYKEKFGFIFLICASGRSTTEILAELKKRYQNRPIVEFEIAAQEQMKITEL 149
           LQELS WNAQY +KFGF+FLICASGRST+EILAELKKRY+N+PI EFEIAAQEQMKITEL
Sbjct: 96  LQELSDWNAQYMQKFGFVFLICASGRSTSEILAELKKRYKNKPIFEFEIAAQEQMKITEL 155

Query: 150 RLGKLFSTKINAASTGNQHSTSFGAKAEEDRVGIIGGHLTAALNFSSGKASQXXXXXXXX 209
           RLGKLFSTK+ AAST NQ  T F  K EEDR+ +IGGHLTA LN  SGKASQ        
Sbjct: 156 RLGKLFSTKLKAASTSNQCHTKFATKVEEDRMAVIGGHLTAELNSLSGKASQIPTRTRPP 215

Query: 210 XXXHVLDVSRGCPAGGVEVCLEMWNGTQPRPLFGEIGVDSWVVQGASTTDADGRCGQLMS 269
              HVLD+SRGCPA G+EVCLEMW G QPRPLFGE  +D W  QG+STTDADGR GQLM+
Sbjct: 216 ITTHVLDISRGCPAAGIEVCLEMWKGIQPRPLFGETDIDGWAFQGSSTTDADGRSGQLMN 275

Query: 270 MVDVVNPGIYRISFNTGKYCPSGFFPYVSIVFEIREAQNREHFHVPLLFSPFSFTTYRGS 329
           +V+VVNPGIYRISFNTGKY PSGFFPYVSIVFEIRE+QN EHFHVPLL SPFSF TYRGS
Sbjct: 276 IVNVVNPGIYRISFNTGKYFPSGFFPYVSIVFEIRESQNTEHFHVPLLLSPFSFATYRGS 335