Jatropha Genome Database

JcCA0310141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310141.10 - phase: 0 /pseudo
         (142 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29709.m001232 metal ion binding protein, putative                     119   6e-28
30078.m002291 metal ion binding protein, putative                      58   2e-09
29589.m001258 conserved hypothetical protein                           53   5e-08
30147.m014470 metal ion binding protein, putative                      50   3e-07
29589.m001234 metal ion binding protein, putative                      46   5e-06

>29709.m001232 metal ion binding protein, putative
          Length = 249

 Score =  119 bits (297), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 80/98 (81%), Gaps = 4/98 (4%)

Query: 19  DEIITAVYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEGVIDVIKVHKQIEK 78
           DE+ITAVY+VNLHC+QCARDIK PLM  +GVHNVD D  K+EIKV+GVIDVIK+HKQIEK
Sbjct: 14  DEVITAVYKVNLHCQQCARDIKKPLMNMQGVHNVDVDFQKAEIKVKGVIDVIKIHKQIEK 73

Query: 79  FSQRKVELVT-QVKIKDET---KEVQEAKQVSLLHSNS 112
           +S++KVE+V+ ++KIK+     K+V E  + ++L + S
Sbjct: 74  WSKKKVEMVSPEIKIKNTGATEKKVVEQTKKAILRTTS 111


>30078.m002291 metal ion binding protein, putative
          Length = 345

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 52/80 (65%)

Query: 15  EKEADEIITAVYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEGVIDVIKVHK 74
           EK+ D  + +VY++++HCE CA+  ++ + R  GV  V  D + +++ V G +D  KV  
Sbjct: 31  EKKDDAKVISVYKIDMHCEGCAKKFRSAVKRLEGVEAVKTDCEGNKLTVTGKVDPAKVKA 90

Query: 75  QIEKFSQRKVELVTQVKIKD 94
           ++E+ +++KV++++ +  KD
Sbjct: 91  RLEEKTKKKVDIISPLPKKD 110


>29589.m001258 conserved hypothetical protein
          Length = 143

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 47/83 (56%)

Query: 14 EEKEADEIITAVYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEGVIDVIKVH 73
          EE   + IIT V  V +HCE CA +I +     +GV  V  +ID +E+ V G +D +++ 
Sbjct: 2  EEAARNPIITVVLEVGMHCEGCASEIVHSARGLKGVERVKVNIDSNELIVVGQVDPLQIQ 61

Query: 74 KQIEKFSQRKVELVTQVKIKDET 96
          + + +  ++KVELV+      ET
Sbjct: 62 EDLSRKIKKKVELVSPQPKNGET 84


>30147.m014470 metal ion binding protein, putative
          Length = 349

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query: 21  IITAVYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEGVIDVIKVHKQIEKFS 80
           +I  V +V +HCE CA +IK  + R +GV + D D+  SE+ V+GV D  K+ + + K +
Sbjct: 171 VIIVVLKVYMHCEACAMEIKKRIQRMKGVESADPDLKSSEVTVKGVFDPQKLVEYVRKRT 230

Query: 81  QRKVELVTQ 89
            +   +V Q
Sbjct: 231 GKHALIVKQ 239


>29589.m001234 metal ion binding protein, putative
          Length = 358

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 12  SKEEKEADEIITAVYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEGVIDVIK 71
           SK++KEA  + TAV +V  HC  C   I   L + +GV  +  D  K  + V+G +DV  
Sbjct: 147 SKKQKEA-PVTTAVIKVAFHCLGCIEKIHKILSKAKGVQEMTLDKQKETVTVKGSMDVKA 205

Query: 72  VHKQIEKFSQRKVELVTQVKIKD 94
           + + +++  +R VE++   K KD
Sbjct: 206 LTEALKERLKRPVEIMPPKKEKD 228