Jatropha Genome Database

JcCA0310021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310021.10 + phase: 1 /partial
         (53 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30076.m004543 conserved hypothetical protein                           48   8e-07

>30076.m004543 conserved hypothetical protein
          Length = 68

 Score = 48.1 bits (113), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 27/34 (79%)

Query: 1  ASHQKLVMKAEEVMETQLNDAHRRITAVHKTARE 34
          ASH+KL+MK EE +ETQLN A RRITAV+K   E
Sbjct: 20 ASHKKLLMKVEEAVETQLNGAERRITAVNKAISE 53