Jatropha Genome Database

JcCA0309961.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309961.30 - phase: 2 /pseudo/partial
         (93 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011101 homeobox protein knotted-1, putative                     89   4e-19
29848.m004577 homeobox protein knotted-1, putative                     68   1e-12
29737.m001270 homeobox protein knotted-1, putative                     58   8e-10

>30190.m011101 homeobox protein knotted-1, putative
          Length = 302

 Score = 89.0 bits (219), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/46 (91%), Positives = 43/46 (93%)

Query: 48  LQMDFSLDQPSVDGHDLMGFGPLIPTESERSLMERVRQELKIELKQ 93
           LQMDFSLDQ   DGHDLMGFGPL+PTESERSLMERVRQELKIELKQ
Sbjct: 167 LQMDFSLDQSGADGHDLMGFGPLLPTESERSLMERVRQELKIELKQ 212


>29848.m004577 homeobox protein knotted-1, putative
          Length = 456

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/41 (80%), Positives = 35/41 (85%)

Query: 53  SLDQPSVDGHDLMGFGPLIPTESERSLMERVRQELKIELKQ 93
           +L  PS+DG D MGFGPLIPTESERSLMERVR ELK ELKQ
Sbjct: 296 NLFDPSLDGADTMGFGPLIPTESERSLMERVRHELKHELKQ 336


>29737.m001270 homeobox protein knotted-1, putative
          Length = 374

 Score = 58.2 bits (139), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 58  SVDGHDLMGFGPLIPTESERSLMERVRQELKIELKQ 93
           S++G D MGFGPL+PTE+ERSLME VR+ELK ELKQ
Sbjct: 212 SLEGLDCMGFGPLVPTETERSLMEHVRKELKHELKQ 247