Jatropha Genome Database

JcCA0309861.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309861.20 - phase: 0 
         (519 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008683 shikimate dehydrogenase, putative                       861   0.0  
29647.m002035 shikimate dehydrogenase, putative                       572   e-163
29726.m003976 shikimate dehydrogenase, putative                       487   e-138
30128.m008684 shikimate dehydrogenase, putative                       449   e-126
30128.m008685 3-dehydroquinate dehydratase, putative                  348   5e-96
30128.m008686 shikimate dehydrogenase, putative                       119   3e-27
54724.m000014 Shikimate dehydrogenase, putative                        69   6e-12

>30128.m008683 shikimate dehydrogenase, putative
          Length = 519

 Score =  861 bits (2225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/519 (80%), Positives = 453/519 (87%)

Query: 1   MGHVGLLNSSAMVCAPLMAQSVEQMVRDMYSAKSQGADVVEVRLDYIKNFQPGQDLETIL 60
           MG VG L SS MVC PLMAQSVEQM+ DMY+AK+QGADVVEVRLDYI NFQP QDL+ IL
Sbjct: 1   MGSVGELTSSVMVCTPLMAQSVEQMISDMYNAKTQGADVVEVRLDYIDNFQPPQDLQAIL 60

Query: 61  RKKPLPVIIVYRSKCEGGLFEGDEHTRLEVLRLAHELGADYIDLELKVASDMIGELKKTH 120
           R KPLPVIIVYR K EGGL+EGDE TRLE LRLA+ LGADY+D ELKVASD+IGELK TH
Sbjct: 61  RNKPLPVIIVYRPKSEGGLYEGDEPTRLEALRLAYVLGADYVDFELKVASDLIGELKGTH 120

Query: 121 QTDSKIIVSCYLTGATPPKENLSHLVGSMQAAGADIIKLVSNANNITELQRIFYLLLHSQ 180
            T SK+IVSCY+ G  P KENLS LV SMQA GADIIKLVS ANNITEL RIF+L+LH Q
Sbjct: 121 HTGSKVIVSCYVNGDMPTKENLSQLVASMQATGADIIKLVSTANNITELDRIFHLILHCQ 180

Query: 181 VPLIAYSVGERGLISQILSPKFGGSLVYGSIEGNLIPGLPTLDSLREAYKVERINSDTKV 240
           VP+IAYSVGERGLISQ+LSPKFGGSL+YGS+EG+ IPGLPTLDSLREAYKV  INSDTKV
Sbjct: 181 VPIIAYSVGERGLISQLLSPKFGGSLLYGSMEGSSIPGLPTLDSLREAYKVAYINSDTKV 240

Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKEFFSVYSSPDYAGFSVGFPYK 300
           FGL+SKPV HSKGP+LHNPTFRH NYNG YVPMFVDDLKEFFSVYSSPD+AGFSVGFPYK
Sbjct: 241 FGLVSKPVSHSKGPLLHNPTFRHANYNGTYVPMFVDDLKEFFSVYSSPDFAGFSVGFPYK 300

Query: 301 EAVVEFCDEVHPLAKSIGAVNTIVRRPSDGKLIGYNTDCEASITAIEDALKEQGYINGRT 360
           EAVVEFCDEVHPLAKSIGAVNTI+RRP DGKLIG+NTDCEA+ITAIEDALKEQGY++GRT
Sbjct: 301 EAVVEFCDEVHPLAKSIGAVNTIIRRPGDGKLIGHNTDCEAAITAIEDALKEQGYMDGRT 360

Query: 361 SFSSSLAGRQXXXXXXXXXXXXXXXXXKSRGARIIIFDIDFERTKSLAHAVSGEAQPFKN 420
           S +S L GRQ                 KSRGARI+IFDID ER K LA AVSGEAQ F+N
Sbjct: 361 SSNSPLTGRQFVLVGAGGAGRALAFGAKSRGARIVIFDIDLERAKFLADAVSGEAQLFEN 420

Query: 421 LVHFRPETDAILANATPLGMHPNTERIPVAEETLGIYQLVFDAVYTPRKTRLLKEAEAAG 480
           +V+F PE  AILANATP+GMHPNTERIPVAE TLGIYQLVFDAVYTPRKTRLLKEAEAAG
Sbjct: 421 VVNFEPENGAILANATPIGMHPNTERIPVAEATLGIYQLVFDAVYTPRKTRLLKEAEAAG 480

Query: 481 AIIVSGVEMFLRQAIGQFNLFTGREAPEDFMREIVLAKF 519
           AIIVSGVEMFLRQA+GQF+LFTGREAP +FMREIVLAKF
Sbjct: 481 AIIVSGVEMFLRQAMGQFSLFTGREAPTEFMREIVLAKF 519


>29647.m002035 shikimate dehydrogenase, putative
          Length = 515

 Score =  572 bits (1473), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 285/509 (55%), Positives = 368/509 (72%), Gaps = 2/509 (0%)

Query: 12  MVCAPLMAQSVEQMVRDMYSAKSQGADVVEVRLDYIKNFQPGQDLETILRKKPLPVIIVY 71
           +VC PL  ++  +M+  M  A+ +GAD+VE+R+D + +F     +E +++ + LP I+ +
Sbjct: 8   LVCTPLECETAGEMLSCMEKARGEGADLVELRVDSM-SFSHISQVEKLIKLRTLPAIVSF 66

Query: 72  RSKCEGGLFEGD-EHTRLEVLRLAHELGADYIDLELKVASDMIGELKKTHQTDSKIIVSC 130
           R K       GD + T L+VL LA +L  +++++E +VASD+       +++  K+IVS 
Sbjct: 67  RPKTSKISSNGDSKKTCLQVLSLALDLDVEFVEMEYEVASDVSMAEYIYNRSSGKLIVSS 126

Query: 131 YLTGATPPKENLSHLVGSMQAAGADIIKLVSNANNITELQRIFYLLLHSQVPLIAYSVGE 190
           Y+ G  P  E L +L+ ++Q+ GAD+IKLV N + IT+L  +F +L H QVPLIA +VG 
Sbjct: 127 YVNGGKPSAEKLGNLIANLQSTGADVIKLVINVDYITDLAPVFKMLAHCQVPLIALAVGS 186

Query: 191 RGLISQILSPKFGGSLVYGSIEGNLIPGLPTLDSLREAYKVERINSDTKVFGLISKPVGH 250
           RGLISQ+L PKFGG LVYGS+    +PG+PTL SLR  YK+E INSDTKVFGLIS PVGH
Sbjct: 187 RGLISQLLGPKFGGFLVYGSLRDKAVPGMPTLFSLRHVYKLEYINSDTKVFGLISNPVGH 246

Query: 251 SKGPILHNPTFRHVNYNGIYVPMFVDDLKEFFSVYSSPDYAGFSVGFPYKEAVVEFCDEV 310
           SKGPILHNP FRH  YNGIYVPM VDD+KEFF  Y+S D+AGFSVG P+KEA V  CDEV
Sbjct: 247 SKGPILHNPAFRHTGYNGIYVPMQVDDIKEFFRTYTSTDFAGFSVGIPHKEAAVSCCDEV 306

Query: 311 HPLAKSIGAVNTIVRRPSDGKLIGYNTDCEASITAIEDALKEQGYINGRTSFSSSLAGRQ 370
           HPLAKSIGAVNTIVRRP+DGKL+GYNTDCEASITAIEDAL+E+   N     +S LAG+ 
Sbjct: 307 HPLAKSIGAVNTIVRRPTDGKLVGYNTDCEASITAIEDALRERRPTNRGALDTSPLAGKT 366

Query: 371 XXXXXXXXXXXXXXXXXKSRGARIIIFDIDFERTKSLAHAVSGEAQPFKNLVHFRPETDA 430
                             SRGAR+++F+ +FER KSLA+AVSGEA P+K L  F+ E D 
Sbjct: 367 FVLIGAGGAGRALAFGASSRGARVVVFNRNFERAKSLANAVSGEALPYKALDRFQRENDM 426

Query: 431 ILANATPLGMHPNTERIPVAEETLGIYQLVFDAVYTPRKTRLLKEAEAAGAIIVSGVEMF 490
           ILANA+ +GM PNT + PV++E L  Y+LVFDAVYTPR TRLL+EA+  GA++VSGVEMF
Sbjct: 427 ILANASAVGMEPNTHQSPVSKEALKSYELVFDAVYTPRNTRLLQEAKEVGAVVVSGVEMF 486

Query: 491 LRQAIGQFNLFTGREAPEDFMREIVLAKF 519
           +RQA+GQF LFTG  APE FMR++VL +F
Sbjct: 487 IRQALGQFRLFTGGLAPEAFMRKLVLEQF 515


>29726.m003976 shikimate dehydrogenase, putative
          Length = 539

 Score =  487 bits (1254), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/513 (47%), Positives = 337/513 (65%), Gaps = 4/513 (0%)

Query: 5   GLLNSSAMVCAPLMAQSVEQMVRDMYSAKSQGADVVEVRLDYIKNFQPGQDLETILRKKP 64
           GL  +  ++CAP+MA SV++M+ ++  AK  GAD+VE+RLD +K F    D++T++ + P
Sbjct: 26  GLRKNPTLICAPIMADSVDKMLINLVKAKENGADLVEIRLDSLKTFNASDDIKTLITRSP 85

Query: 65  LPVIIVYRSKCEGGLFEGDEHTRLEVLRLAHELGADYIDLELKVASDMIGELKKTHQTDS 124
           LP +  YR K EGG ++GDE+ RL+ LRLA ELGADYID+ELKVA      ++       
Sbjct: 86  LPTLFTYRPKWEGGEYDGDENERLDALRLAMELGADYIDVELKVAHKFNDSIRGNKPAKC 145

Query: 125 KIIVSCYLTGATPPKENLSHLVGSMQAAGADIIKLVSNANNITELQRIFYLLLHSQVPLI 184
           K+IVS +    TP  E+L +LV  +QAAGADI+K+ + A +IT++ RIF + +HSQVP+I
Sbjct: 146 KVIVSSHNYHNTPSVEDLGNLVADIQAAGADIVKIATTALDITDVARIFQITVHSQVPII 205

Query: 185 AYSVGERGLISQILSPKFGGSLVYGSIEGNLI--PGLPTLDSLREAYKVERINSDTKVFG 242
              +GERGLIS+IL  KFGG L +G++E  ++  PG P +  L + Y   +I  DTKV+G
Sbjct: 206 GIVMGERGLISRILCAKFGGYLTFGTLESGIVSAPGQPMIKDLLDLYNFRQIGPDTKVYG 265

Query: 243 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKEFFSVYSSPDYAGFSVGFPYKEA 302
           +I KPVGHSK P+L+N  F+ V +NG+YV + VDD+  F   +SS D+AGFS   P+KEA
Sbjct: 266 IIGKPVGHSKSPVLYNEAFKSVGFNGVYVHLLVDDIASFLQTFSSTDFAGFSCTIPHKEA 325

Query: 303 VVEFCDEVHPLAKSIGAVNTIVRRPSDGKLIGYNTDCEASITAIEDALKEQGYINGRTSF 362
            V+ CD +  +A+SIGAVN I+RR  DGKL GYNTD + +ITAIE+ L+    I+G  + 
Sbjct: 326 AVDCCDGIDSVARSIGAVNCIIRRQRDGKLFGYNTDYDGAITAIEEGLRVSQNISG--AA 383

Query: 363 SSSLAGRQXXXXXXXXXXXXXXXXXKSRGARIIIFDIDFERTKSLAHAVSGEAQPFKNLV 422
            S LAG+                  K +GA+++I +  +ER K LA AV G A    +L 
Sbjct: 384 DSPLAGKLFVVIGAGGAGKALAYGAKQKGAKVVIANRTYERAKGLADAVGGVAIALADLG 443

Query: 423 HFRPETDAILANATPLGMHPNTERIPVAEETLGIYQLVFDAVYTPRKTRLLKEAEAAGAI 482
           +FRPE+  +LAN T +GM P  E  P+ +  L  Y LVFDAVYTP+ TRLL+EAE +GA 
Sbjct: 444 NFRPESGMVLANTTSIGMQPKVEETPIPKHALRNYSLVFDAVYTPKITRLLREAEESGAA 503

Query: 483 IVSGVEMFLRQAIGQFNLFTGREAPEDFMREIV 515
            VSG+EMF+ QA  QF  FTG  AP++  R+I+
Sbjct: 504 TVSGLEMFIGQAYEQFENFTGLPAPKELFRKIM 536


>30128.m008684 shikimate dehydrogenase, putative
          Length = 524

 Score =  449 bits (1155), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/512 (44%), Positives = 325/512 (63%), Gaps = 8/512 (1%)

Query: 8   NSSAMVCAPLMAQSVEQMVRDMYSAKSQGADVVEVRLDYIKNFQPGQDLETILRKKPLPV 67
           +S  ++C PLM  +V+QM+ +M  A    ADVVE+RLD ++N  P QDLE ++++ PLP 
Sbjct: 13  SSPTLLCTPLMGTTVDQMLLEMRKATEISADVVEIRLDCLRNLNPRQDLEILIKQSPLPT 72

Query: 68  IIVYRSKCEGGLFEGDEHTRLEVLRLAHELGADYIDLELKVASDMIGELKKTHQTDSKII 127
           ++ YR   EGG +EGDE  R + LR A +LGA+Y+D+EL+VA +    +      + K+I
Sbjct: 73  LVTYRPIWEGGQYEGDETKRQDALRFAMQLGANYVDVELEVAHEFNNSIYGKKPDNFKVI 132

Query: 128 VSCYLTGATPPKENLSHLVGSMQAAGADIIKLVSNANNITELQRIFYLLLHSQVPLIAYS 187
           VS +    TP  E +++LV  +QA GADI+K+ + A +IT+  RIF +++H QVP+I   
Sbjct: 133 VSSHNFHNTPSSEAIANLVARIQATGADIVKIATTALDITDCARIFQIMVHCQVPVIGIV 192

Query: 188 VGERGLISQILSPKFGGSLVYGSIEGNLI--PGLPTLDSLREAYKVERINSDTKVFGLIS 245
           +GERGLIS++LSPKFGG L YG++E   I  PG PT   L + Y    I  DTKV+G+I 
Sbjct: 193 MGERGLISRLLSPKFGGYLTYGALEAGAISAPGQPTAKDLLDLYNFRLIRPDTKVYGIIG 252

Query: 246 KPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKEFFSVYSSPDYA-GFSVGFPYKEAVV 304
           KPVGHSK P+L N  F+ V  N +YV   VDD+++FFS YSS D+A G S   P+KE  +
Sbjct: 253 KPVGHSKSPLLFNAAFKSVGLNAVYVHFLVDDVEKFFSTYSSVDFASGCSCTIPHKEVAL 312

Query: 305 EFCDEVHPLAKSIGAVNTIVRRPSDGKLIGYNTDCEASITAIEDALKEQGYINGRT-SFS 363
           +  DE+ P+AK IGA+N I+RRP D  L+ YNTD   +I AIED L+E   +NG   + +
Sbjct: 313 KCMDEIDPIAKKIGAINNIIRRP-DATLMAYNTDYIGAIDAIEDGLRE---LNGAVPAGT 368

Query: 364 SSLAGRQXXXXXXXXXXXXXXXXXKSRGARIIIFDIDFERTKSLAHAVSGEAQPFKNLVH 423
           S LAG+                    +GAR+++ +  FER K LA  V+G+A     + +
Sbjct: 369 SPLAGKLFVVLGAGGAGKSLAYGAAQKGARVVVANRTFERAKELADKVNGQAMTLDEVQN 428

Query: 424 FRPETDAILANATPLGMHPNTERIPVAEETLGIYQLVFDAVYTPRKTRLLKEAEAAGAII 483
           F PE   +LAN T +GM PN +  P+A+  L  Y +VFDA+YTP+ TRLL+EA+ +GA+I
Sbjct: 429 FHPEEGMVLANTTSVGMKPNIDATPLAKHALKHYCVVFDAIYTPKDTRLLREAKESGAVI 488

Query: 484 VSGVEMFLRQAIGQFNLFTGREAPEDFMREIV 515
           V G EM +RQ   Q+  FTG  APE+  R+++
Sbjct: 489 VYGTEMLIRQGFEQYKNFTGLPAPEELFRQLM 520


>30128.m008685 3-dehydroquinate dehydratase, putative
          Length = 368

 Score =  348 bits (892), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 164/345 (47%), Positives = 245/345 (71%), Gaps = 2/345 (0%)

Query: 9   SSAMVCAPLMAQSVEQMVRDMYSAKSQGADVVEVRLDYIKNFQPGQDLETILRKKPLPVI 68
           +S ++CAP+MA+SV+ M+  +  AK  GAD+VE+R+D+++NF P QDLE ++++  LP +
Sbjct: 22  NSTLICAPVMAKSVDGMLVQINKAKELGADLVEIRVDFLENFSPIQDLEILIKQSALPTL 81

Query: 69  IVYRSKCEGGLFEGDEHTRLEVLRLAHELGADYIDLELKVASDMIGELKKTHQTDSKIIV 128
           I YR K E G ++GDE  R E LRLA ELG+D+ID+ELKVA +    ++       KIIV
Sbjct: 82  ITYRPKWEVGEYDGDESKRQEALRLAIELGSDFIDVELKVAPEFFNSIQGKKPEKVKIIV 141

Query: 129 SCYLTGATPPKENLSHLVGSMQAAGADIIKLVSNANNITELQRIFYLLLHSQVPLIAYSV 188
           S +    TP  E +++LV  +Q+ GADI+K+ + A +IT+  R+F +L+H+QVP+I   +
Sbjct: 142 SSHNYENTPSVEEIANLVAKIQSTGADIVKVATTALDITDNARMFQVLVHAQVPMIGIVM 201

Query: 189 GERGLISQILSPKFGGSLVYGSIEGNLI--PGLPTLDSLREAYKVERINSDTKVFGLISK 246
            ERGL+S+IL+ KFGG L +GSIE  ++  PG PT+  L + Y + +I +DTKV G+I  
Sbjct: 202 AERGLMSRILAAKFGGFLTFGSIEAGVVSAPGQPTITDLLDLYNLRQIGADTKVHGVIGN 261

Query: 247 PVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKEFFSVYSSPDYAGFSVGFPYKEAVVEF 306
           P+GHSK P L+N  F+ V +NGIY+P+ VD++  + S YSS D+ G+S   P+KEA ++ 
Sbjct: 262 PIGHSKSPHLYNSAFKSVRFNGIYLPLLVDNVANYISTYSSSDFVGYSYTIPHKEAGLKC 321

Query: 307 CDEVHPLAKSIGAVNTIVRRPSDGKLIGYNTDCEASITAIEDALK 351
           CDEV P+A++IGA++ ++RRPSDGKL+GYN D   +I AIE+AL+
Sbjct: 322 CDEVDPIAQAIGAISCMIRRPSDGKLMGYNVDYLGAIGAIEEALR 366


>30128.m008686 shikimate dehydrogenase, putative
          Length = 146

 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 79/126 (62%)

Query: 390 RGARIIIFDIDFERTKSLAHAVSGEAQPFKNLVHFRPETDAILANATPLGMHPNTERIPV 449
           +GAR+++ +  F++ K LA  V G+A     L  F PE   ILAN T +GM P  +  P+
Sbjct: 17  KGARVVVANRSFDKAKELASKVGGQAMTLAELKDFHPEEGMILANTTSVGMKPRIDDTPL 76

Query: 450 AEETLGIYQLVFDAVYTPRKTRLLKEAEAAGAIIVSGVEMFLRQAIGQFNLFTGREAPED 509
            +E L  Y LVFDA+YTP+ TRLL+EA+  GA  V G EMF+ QA  QF  FTG  AP+ 
Sbjct: 77  PKEALKHYSLVFDAIYTPKLTRLLREAQECGATTVYGTEMFINQAFVQFERFTGLPAPKQ 136

Query: 510 FMREIV 515
            +R+++
Sbjct: 137 LIRDVL 142


>54724.m000014 Shikimate dehydrogenase, putative
          Length = 282

 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 99/253 (39%), Gaps = 21/253 (8%)

Query: 234 INSDTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLK---EFFSVYSSPDY 290
           I+ +T++  ++  P+  +K P L N  F+  + N   VP  V           +    + 
Sbjct: 4   IDGETRIVAILGDPIAQAKSPQLFNACFQRDDVNATLVPFHVPATHLGPVLEGLRGIVNL 63

Query: 291 AGFSVGFPYKEAVVEFCDEVHPLAKSIGAVNTIVRRPSDGKLIGYNTDCEASITAIEDAL 350
           AG  V  P+K         +   A+  G VN + RR +DG   G   D E          
Sbjct: 64  AGVVVTVPHKLQATVHAARLSEAAQQTGGVNCL-RREADGSWTGAMFDGE---------- 112

Query: 351 KEQGYINGRTSFSSSLAGRQXXXXXXXXXXXXXXXXXKSRG-ARIIIFDIDFERTKSLAH 409
              G++ G       + G+                     G A + +FD +    + LAH
Sbjct: 113 ---GFVKGLPGRGHGVRGKSALIVGTGGAGVAVAHALIDAGIASLDLFDSNATSLRRLAH 169

Query: 410 AVS--GEAQPFKNLVHFRPETDAILANATPLGMHPNTERIPVAEETLGIYQLVFDAVYTP 467
           A+   G     +  V        ++ NATP GM P  + +P+     G + ++ D +  P
Sbjct: 170 ALQKRGSGVVVRESVPRAQACHDLVVNATPCGMRPG-DPLPIDLADAGPHAVIADLIMKP 228

Query: 468 RKTRLLKEAEAAG 480
            +TRLL+EAEA G
Sbjct: 229 AQTRLLEEAEARG 241