Jatropha Genome Database

JcCA0309861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309861.10 + phase: 0 
         (214 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014382 conserved hypothetical protein                           92   2e-19
29642.m000276 conserved hypothetical protein                           51   3e-07

>30170.m014382 conserved hypothetical protein
          Length = 263

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 90/184 (48%), Gaps = 14/184 (7%)

Query: 1   MPLECFIWIQHCWNERFKKFLNRKEGKFQHLPDSIIVEILSRLPSEQLSNCQLVCRKFRD 60
           M  ECFIWI H W E    F   K G  + LP+ II EILSRLP++++  C  V ++++ 
Sbjct: 1   MEFECFIWIVHIWKELLSIFPPLKGGDVRPLPNDIIFEILSRLPADEVLKCCSVSKEWKA 60

Query: 61  LTSTPYFREIHSVKRASPIVLVQYFNPGIH--DKDMQVYLLDEKTKDEN--QKLNCTGRF 116
           L  TP+F +   + RA PIV +QY  P  H     + V+ LD+  K+    +K+      
Sbjct: 61  LVLTPFFSQAQ-LTRACPIVFIQYRRPESHFFMHGLDVFFLDQGAKNNRMIEKVYNKPTL 119

Query: 117 FMYCL---ILCSCNGLILFDSRCKLC------INNPLTAELIFLKNPYQSGGFGCGFYFH 167
            M  +   +  S NG I+F             I NP+T   I L+NP  SG      Y H
Sbjct: 120 NMQKIMPKLAFSYNGFIIFKEYKSFSPSTIFFIYNPITQAEITLENPVWSGDLCVHPYSH 179

Query: 168 TSEK 171
            ++K
Sbjct: 180 LTQK 183


>29642.m000276 conserved hypothetical protein
          Length = 410

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 12/158 (7%)

Query: 29  QHLPDSIIVEILSRLPSEQLSNCQLVCRKFRDLTSTPYFREIHSVKRAS----PIVLVQY 84
           + LP  + ++ILSRLP   L N + VCR +R L   P    +H  + A+     ++L+  
Sbjct: 24  ESLPCELALDILSRLPITHLINVKRVCRFWRSLVQHPLLASMHFSRIANNNDPCLLLLCD 83

Query: 85  FNPGIHDKDMQVYLLDEKTKDENQKLNCTGRFFMYCLILCSCNGLI-LFDSRCKLC--IN 141
                H   +    LDE   +   ++          L++ SCNGL+ L DS  +    I 
Sbjct: 84  LPIKSHLYSLHFSALDETIIETVTRIPVP--VIPKFLVIGSCNGLLYLLDSLQQRANYIY 141

Query: 142 NPLTAELIFLKNPYQ---SGGFGCGFYFHTSEKEYRLL 176
           NP T++ + L  P Q         GF FH++ KEY+++
Sbjct: 142 NPFTSDYLELPEPGQVLNQHRVATGFGFHSTTKEYKVV 179