Jatropha Genome Database

JcCA0309351.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309351.30 + phase: 0 /partial/short
         (43 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30055.m001573 40S ribosomal protein S25, putative                      79   6e-16
30155.m001596 40S ribosomal protein S25, putative                      75   6e-15
30131.m007059 40S ribosomal protein S25-1, putative                    72   7e-14

>30055.m001573 40S ribosomal protein S25, putative
          Length = 108

 Score = 78.6 bits (192), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/38 (100%), Positives = 38/38 (100%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 43
           RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT
Sbjct: 71  RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 108


>30155.m001596 40S ribosomal protein S25, putative
          Length = 108

 Score = 75.1 bits (183), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/38 (94%), Positives = 37/38 (97%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 43
           RINGSLARRAIKDLMA GSIRM+SAHASQQIYTRATNT
Sbjct: 71  RINGSLARRAIKDLMAGGSIRMVSAHASQQIYTRATNT 108


>30131.m007059 40S ribosomal protein S25-1, putative
          Length = 108

 Score = 71.6 bits (174), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 33/38 (86%), Positives = 37/38 (97%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 43
           R+NGSLARRAI++LMARG IRM+SAHASQQIYTRATNT
Sbjct: 71  RVNGSLARRAIRELMARGLIRMVSAHASQQIYTRATNT 108