Jatropha Genome Database

JcCA0309311.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309311.20 - phase: 0 
         (115 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29977.m000249 DNA binding protein, putative                           149   2e-37

>29977.m000249 DNA binding protein, putative
          Length = 234

 Score =  149 bits (377), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 82/111 (73%)

Query: 4   YYIEPTTGRKFRSKREVQYYLETGTLKKRKKGAESSEADVNPPENSGSQXXXXXXXXXXG 63
           YYIEP TGR+FRSK+EVQY+LETGT KK K+G E+SE DVN  E+ GSQ           
Sbjct: 123 YYIEPVTGRRFRSKKEVQYFLETGTKKKTKRGMENSEGDVNFTESPGSQKSKKASKNAKV 182

Query: 64  SIMKFDYLNVPDKIEWALTVANEDAWTPFTGGSKVPEYERQSWEFEMMHFH 114
               FDYLNVPD+IEWAL  AN+DAWTPF GG KV EY+RQ+W+FEM+H H
Sbjct: 183 QKRNFDYLNVPDRIEWALIDANQDAWTPFLGGQKVAEYDRQNWDFEMLHLH 233