Jatropha Genome Database

JcCA0309311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309311.10 - phase: 0 /partial
         (88 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30028.m000254 triosephosphate isomerase, putative                     107   2e-24
27383.m000156 triosephosphate isomerase, putative                      97   2e-21
29711.m000323 triosephosphate isomerase, putative                      64   1e-11

>30028.m000254 triosephosphate isomerase, putative
          Length = 118

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/79 (67%), Positives = 53/79 (67%)

Query: 1  MGRKFFVGGNWKCNGTTEEVKKIVTTLNEAXXXXXXXXXXXXXXXXXXXXXXXXXXRPDF 60
          MGRKFFVGGNWKCNGTTEEVKKIVTTLNEA                          RPDF
Sbjct: 1  MGRKFFVGGNWKCNGTTEEVKKIVTTLNEAEVPSDDVVEVVLSPPFVFLPLVKSLLRPDF 60

Query: 61 QVAAQNCWVRKGGAFTGEV 79
          QVAAQNCWVRKGGAFTGEV
Sbjct: 61 QVAAQNCWVRKGGAFTGEV 79


>27383.m000156 triosephosphate isomerase, putative
          Length = 254

 Score = 96.7 bits (239), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/79 (58%), Positives = 50/79 (63%)

Query: 1  MGRKFFVGGNWKCNGTTEEVKKIVTTLNEAXXXXXXXXXXXXXXXXXXXXXXXXXXRPDF 60
          M RKFFVGGNWKCNGT+EEVKKIV+TLNE                           +PDF
Sbjct: 1  MARKFFVGGNWKCNGTSEEVKKIVSTLNEGHVPSSDVVEVVISPPFVFLPLVKDSLKPDF 60

Query: 61 QVAAQNCWVRKGGAFTGEV 79
           VAAQNCWV+KGGAFTGEV
Sbjct: 61 HVAAQNCWVKKGGAFTGEV 79


>29711.m000323 triosephosphate isomerase, putative
          Length = 313

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 5   FFVGGNWKCNGTTEEVKKIVTTLNEAXXXXXXXXXXXXXXXXXXXXXXXXXXRPDFQVAA 64
           FFVGGNWKCNGT E + K+V+ LN+A                          R   +++A
Sbjct: 64  FFVGGNWKCNGTKESISKLVSDLNDAKLEADVDVVVAPPFIYIDQVKSSLTDR--IEISA 121

Query: 65  QNCWVRKGGAFTGEV 79
           QN WV KGGAFTGE+
Sbjct: 122 QNSWVSKGGAFTGEI 136