Jatropha Genome Database

JcCA0309221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309221.20 + phase: 0 /partial
         (178 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008740 conserved hypothetical protein                          165   1e-41

>30128.m008740 conserved hypothetical protein
          Length = 400

 Score =  165 bits (417), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/180 (53%), Positives = 111/180 (61%), Gaps = 4/180 (2%)

Query: 1   METSTTAASAAPGRPLGDHTLKHHHFHSPQQHQNXXXXXXXXXXXXXXXXXX--XXXXXX 58
           METST +A AAP RPLG+H LKH++ HS   H +                          
Sbjct: 1   METSTNSA-AAPARPLGNHILKHNYSHSHHTHSHHHSSTLSSTSILIIIISAICAIVILA 59

Query: 59  XXXXXXXXXXXKSAKNTSSSVKDNCSINNASCRFIAHSTITFTSSPDVKGGCLYGSNLSQ 118
                      KSAKN SSS KDN SINN +C F+A +T++FTSSPDVK GCLYGSN+SQ
Sbjct: 60  IFMLIVMLKRLKSAKNVSSS-KDNSSINNKTCWFVADTTVSFTSSPDVKEGCLYGSNMSQ 118

Query: 119 KPPRKYKGVQVFTYKELEVATERFSEAXXXXXXXXXXXXXXXLADGTVAAVKMLRREGKQ 178
           KPPRK+KGVQVFTYKELEVAT+RFSEA               LADGT+AA+KM RREGKQ
Sbjct: 119 KPPRKHKGVQVFTYKELEVATDRFSEANVIGNGGYGVVYKSVLADGTLAAIKMFRREGKQ 178