Jatropha Genome Database

JcCA0309221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309221.10 + phase: 0 /pseudo
         (181 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008741 UDP-N-acetylglucosamine transferase subunit alg13,...   269   6e-73

>30128.m008741 UDP-N-acetylglucosamine transferase subunit alg13,
           putative
          Length = 178

 Score =  269 bits (687), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 135/178 (75%), Positives = 147/178 (82%), Gaps = 3/178 (1%)

Query: 5   EATVDQ--KKRIVFVTVGTNTIRCSCESGGYKGS*TKNCLEEGILISLFKMGRGSYTPTK 62
           E T+DQ  KKR+VFVTVGT        +   +    +    +G    L +MGRGSYTPTK
Sbjct: 2   EDTLDQNKKKRMVFVTVGTTLFDALVRAVDTEQV-KQQLFRKGYTHLLIQMGRGSYTPTK 60

Query: 63  SEGEDGSVAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRLHKPLIVVVNEDLMDNH 122
           +EGEDGS+AVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRL KPLIVVVNEDLMDNH
Sbjct: 61  TEGEDGSLAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRLQKPLIVVVNEDLMDNH 120

Query: 123 QTELAEELAERKHLYCARPQTIHHTIADMDLESLLPYPAGDATPVAKLINRFLGFPDD 180
           Q+ELAEELAERK+LYCARPQT+HH IADMDLESLLPY AGDATPV KLINRFLGFPDD
Sbjct: 121 QSELAEELAERKYLYCARPQTLHHIIADMDLESLLPYSAGDATPVVKLINRFLGFPDD 178