Jatropha Genome Database

JcCA0309141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309141.10 - phase: 0 /pseudo/partial
         (233 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29628.m000748 isocitrate dehydrogenase, putative                      159   9e-40
30078.m002318 isocitrate dehydrogenase, putative                      103   6e-23
28506.m000056 Tartrate dehydrogenase, putative                         52   3e-07
27446.m000482 3-isopropylmalate dehydrogenase, putative                51   4e-07

>29628.m000748 isocitrate dehydrogenase, putative
          Length = 372

 Score =  159 bits (402), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 74/88 (84%), Positives = 76/88 (86%)

Query: 117 LNNRKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDV 176
           LNNRKKVTAVHKANIMKLADGLFLESCREV++KYPGIKYNEIIVDNCCMQLVSKPEQFDV
Sbjct: 195 LNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDV 254

Query: 177 MVTPNLYGNLVXXXXXXXXXXXXVMPGG 204
           MVTPNLYGNLV            VMPGG
Sbjct: 255 MVTPNLYGNLVANTAAGIAGGTGVMPGG 282


>30078.m002318 isocitrate dehydrogenase, putative
          Length = 364

 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 57/70 (81%)

Query: 118 NNRKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDVM 177
           + R++V+A+HKANIM+  DGLFL+ CREV+ KYP IKY E+++DNCCM LV  P  FDV+
Sbjct: 192 HGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVIDNCCMMLVKNPALFDVL 251

Query: 178 VTPNLYGNLV 187
           V PNLYG+++
Sbjct: 252 VMPNLYGDII 261


>28506.m000056 Tartrate dehydrogenase, putative
          Length = 359

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 43/68 (63%)

Query: 120 RKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVT 179
           +K +T+  K+N + ++   + E   E+ + YP +K+++  +D  C + V  PE+FDV+V 
Sbjct: 182 KKHLTSATKSNGISISMPFWDERVAEIGASYPDVKWDKYHIDILCARFVLSPERFDVVVA 241

Query: 180 PNLYGNLV 187
            NL+G+++
Sbjct: 242 SNLFGDIL 249


>27446.m000482 3-isopropylmalate dehydrogenase, putative
          Length = 406

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 122 KVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPN 181
           K+ +V KAN+++ A   + +    ++ +YP ++ + + VDN  MQLV  P+QFD +VT N
Sbjct: 227 KLCSVDKANVLE-ASMFWRKRVIAIAEEYPDVELSHMYVDNAAMQLVRNPKQFDTIVTNN 285

Query: 182 LYGNLV 187
           ++G+++
Sbjct: 286 IFGDIL 291