Jatropha Genome Database

JcCA0308941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308941.10 + phase: 0 /TE/partial
         (662 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28725.m000320 DNA helicase hus2, putative                             174   1e-43

>28725.m000320 DNA helicase hus2, putative
          Length = 1233

 Score =  174 bits (441), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 114/158 (72%), Gaps = 11/158 (6%)

Query: 480 FSYRKSFHVENFWQAWHTLSSLQISCRSYLQPGKTGPTKDA--------RNDLKSSSNNC 531
           F   +S  VE   +AWH LS LQISCR+YLQPGKTGP K+A        R    SSS+  
Sbjct: 76  FQRLQSPQVE---KAWHALSCLQISCRNYLQPGKTGPLKNANLLQDVGQRPTFCSSSDGG 132

Query: 532 KYSERTLVHQNFSESRVKNNESVRYMGNSFPQDNARAAEARNSVGQQTEIKASGANNTLS 591
           KYSE   VHQNFSES  KNN+S RYMGN  PQDNA AAE  N + +Q++IKAS ANNT S
Sbjct: 133 KYSECLHVHQNFSESGAKNNKSERYMGNYVPQDNATAAETGNGLQRQSQIKASAANNTES 192

Query: 592 RDFAGSFNNHNIHTNQNRESAEASADFIDDDDLLGVIN 629
           + F+GSF++H+++T+ N+ESAEAS DFIDDDDLLG I+
Sbjct: 193 KTFSGSFSDHSVYTSHNKESAEASTDFIDDDDLLGNID 230