Jatropha Genome Database

JcCA0308861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308861.10 + phase: 0 /partial
         (207 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29333.m001072 50S ribosomal protein L22, putative                     322   6e-89

>29333.m001072 50S ribosomal protein L22, putative
          Length = 278

 Score =  322 bits (826), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 163/208 (78%), Positives = 178/208 (85%), Gaps = 1/208 (0%)

Query: 1   GISSSRKLLAGSSEETPVHSPLTPALTPLSSGTTKEQRAVTKPSTVQAVLKGIKQSPKKL 60
           GISSSRKLLA SSE+TP+ SPLTPALTPLSSG T+E++A+ K S VQAVLK IKQSPKK+
Sbjct: 71  GISSSRKLLADSSEQTPIRSPLTPALTPLSSGKTEEKKAICKQSKVQAVLKNIKQSPKKV 130

Query: 61  NLVAALVRGMRVEDALLQLQLTIKRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFVG 120
           NLVA LVRGMRVEDALLQLQ+TIKRA+KTVYQVIHSARANATHNHGLDPDRLLVAEAFVG
Sbjct: 131 NLVAELVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVG 190

Query: 121 KGFFKKRTSYHAKGRAGIKVRPECRLXXXXXXXXXXXXAKIARLRVHNFRKLSKRERQLV 180
           KG FKKR SYHAKGRAG+KVR ECRL            AKIARLRVHNFRK +K+E++LV
Sbjct: 191 KGNFKKRISYHAKGRAGVKVRAECRLTVVVREITPEEEAKIARLRVHNFRKRTKQEKRLV 250

Query: 181 PHKLIETTPIWNR-KGKAAGREPSAVAA 207
           PHKLIETTPIWNR K KAA  EP  +AA
Sbjct: 251 PHKLIETTPIWNRKKAKAADYEPDGMAA 278