Jatropha Genome Database

JcCA0308681.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308681.20 + phase: 0 /partial
         (156 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006116 conserved hypothetical protein                          240   2e-64
29226.m000080 conserved hypothetical protein                          192   7e-50

>29908.m006116 conserved hypothetical protein
          Length = 224

 Score =  240 bits (612), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 115/149 (77%), Positives = 130/149 (87%)

Query: 1   EFTEYTNFDECLAYIEDFMINHGPFDGLLGFSQGAILSAGLAGLQAKGVALKNVPKIKFL 60
           EFTEYTNFDECLAYIEDFMI +GPFDGLLGFSQGAILSAGL GLQA GVAL  VPKIK+L
Sbjct: 75  EFTEYTNFDECLAYIEDFMIKNGPFDGLLGFSQGAILSAGLPGLQANGVALTKVPKIKYL 134

Query: 61  IIIGGAKFKSPSVAEKAYASPIQCASIHFLGETDFLKPHGLELLESFVEPVVIHHPKGHT 120
           IIIGGAKF++PSVAEKAY SPIQC S+HFLGE D+L+P+GLELLES V+PVVIHHPKGHT
Sbjct: 135 IIIGGAKFRAPSVAEKAYLSPIQCPSLHFLGEMDYLRPYGLELLESCVDPVVIHHPKGHT 194

Query: 121 IPRLDETSQETMLSFIKKIENTLPHSDAT 149
           IPRLDE S+  M SFI++I +    + A+
Sbjct: 195 IPRLDEKSRAIMHSFIERIASAKKENSAS 223


>29226.m000080 conserved hypothetical protein
          Length = 287

 Score =  192 bits (487), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 88/145 (60%), Positives = 115/145 (79%), Gaps = 5/145 (3%)

Query: 1   EFTEYTNFDECLAYIEDFMINHGPFDGLLGFSQGAILSAGLAGLQAKGVALKNVPKIKFL 60
           +F  Y +F+EC+AYIE++M+ +GPFDGLLGFSQGA ++A + G+QA+GVA   VPKI+FL
Sbjct: 138 DFKVYEDFEECVAYIEEYMLKYGPFDGLLGFSQGAFITAAVPGMQAQGVAFTKVPKIRFL 197

Query: 61  III-----GGAKFKSPSVAEKAYASPIQCASIHFLGETDFLKPHGLELLESFVEPVVIHH 115
           I+I     GG KF  P +A  AY+SPI C S+H +GE DF+KP G++LL SFV+PVVIHH
Sbjct: 198 IVISGAKFGGYKFGQPKLAGSAYSSPIDCPSLHIIGEKDFMKPGGIDLLGSFVDPVVIHH 257

Query: 116 PKGHTIPRLDETSQETMLSFIKKIE 140
           PKGH IPRLD+ S +TMLSFI+K+E
Sbjct: 258 PKGHIIPRLDDISLKTMLSFIEKME 282