Jatropha Genome Database

JcCA0308501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308501.20 + phase: 0 /pseudo/partial
         (226 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29680.m001731 conserved hypothetical protein                          198   2e-51

>29680.m001731 conserved hypothetical protein
          Length = 314

 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/156 (66%), Positives = 114/156 (73%), Gaps = 10/156 (6%)

Query: 80  PSDYFKQLPRDLRLDLNDAAFDLSNGPVIDECGQELGELLLNLSRAWELADTSTSRDLAS 139
           P+DYFK+LPRDLRLDLNDAAFDLS+GPVIDECGQELG++LLNLSRAWELADT+TSR L S
Sbjct: 92  PADYFKELPRDLRLDLNDAAFDLSSGPVIDECGQELGKVLLNLSRAWELADTATSRALVS 151

Query: 140 KLPMLE---------TFGKRLVSAGRRFQSMGQYGQGEMQKVAQAMIRTGKLLSANPIXX 190
           +LP+LE           GKRLVSAGRRFQSMGQYGQGEMQKVAQ MI TGKLLS  PI  
Sbjct: 152 QLPVLERTLTNKAKAALGKRLVSAGRRFQSMGQYGQGEMQKVAQEMITTGKLLSEIPI-F 210

Query: 191 XXXXXXXXXXRVFKFWRTSGCSHSXESYIGAAIAVA 226
                     RVFKF          ++ IGAAI V 
Sbjct: 211 TTNEEPKEETRVFKFGELQVAITPEKANIGAAIGVV 246