Jatropha Genome Database

JcCA0308351.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308351.20 - phase: 0 /pseudo/partial
         (220 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29830.m001442 dihydrodipicolinate synthase, putative                  332   1e-91

>29830.m001442 dihydrodipicolinate synthase, putative
          Length = 367

 Score =  332 bits (850), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 154/176 (87%), Positives = 170/176 (96%)

Query: 45  PTIIYNVPSRTGQDIPPGVIHSAAQSPNLAGVKECMGNDRVEQYTEKGIVVWSGNDDECH 104
           PTIIYNVPSRTGQDIPP VIH+ AQSPNLAGVKEC+GNDRVE+YTEKGIVVWSGNDD+CH
Sbjct: 192 PTIIYNVPSRTGQDIPPCVIHTIAQSPNLAGVKECVGNDRVEEYTEKGIVVWSGNDDQCH 251

Query: 105 DARWSHGATGVISVASNLVPGLMRKLMIEGKDPALNSKLLPLIRWLFQEPNPIGLNTALA 164
           D+RW+HGATGVISV SNLVPGLMR+L+ EGK+PALNSKLLPLI WLFQEPNPIGLNTALA
Sbjct: 252 DSRWNHGATGVISVTSNLVPGLMRQLVFEGKNPALNSKLLPLIDWLFQEPNPIGLNTALA 311

Query: 165 QLGVVRPVFRLPYVPLPLPKRIEFVNLVKAIGRENFVGEQDVQVLEDDDFMLVGRY 220
           QLGVVRPVFRLPYVPLPL +R+EFVNLVKAIGRENFVGE+DV+VL+DDDF+L+GRY
Sbjct: 312 QLGVVRPVFRLPYVPLPLAQRVEFVNLVKAIGRENFVGEKDVRVLDDDDFILIGRY 367