Jatropha Genome Database

JcCA0308281.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308281.20 - phase: 0 
         (154 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29751.m001814 conserved hypothetical protein                          166   3e-42

>29751.m001814 conserved hypothetical protein
          Length = 164

 Score =  166 bits (421), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 93/154 (60%), Positives = 102/154 (66%), Gaps = 11/154 (7%)

Query: 1   MATSLTNK---TSVTNQTLSL--FRLSFNFIKSFXXXXXXXXXXXXXXXXXXXXXXXXX- 54
           MAT+L  +   T  TNQTLSL  FRLS N++KSF                          
Sbjct: 1   MATALAKQVSATKATNQTLSLSLFRLSVNYLKSFSTSSSSSSSSSSSPSANATSKKPKRK 60

Query: 55  ---NLFEVAQFLPNWGIGYHMAKSHWKNVSYEITKINLYKDGRHGKAWGIAYKDGAPAAE 111
              NL EVAQFLPNWGIGYH AKSHW  VSYEITKINLYKDG+HGKAWGIA+K+G P A+
Sbjct: 61  KKKNLVEVAQFLPNWGIGYHFAKSHWNEVSYEITKINLYKDGKHGKAWGIAHKNGLPIAD 120

Query: 112 TPKKISGVHKRCWRYIPSLTNALSLESKPISSNS 145
            PKKISGVHKRCWRYIPSL+   SLESKP S  S
Sbjct: 121 APKKISGVHKRCWRYIPSLSK--SLESKPTSPKS 152