Jatropha Genome Database

JcCA0308281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308281.10 - phase: 0 /partial
         (57 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29661.m000909 conserved hypothetical protein                          102   5e-23

>29661.m000909 conserved hypothetical protein
          Length = 104

 Score =  102 bits (253), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/57 (85%), Positives = 52/57 (91%)

Query: 1  MDPRYTGEMLKHLEKQNELLTEAYNSMSHELHKLQVEEEMLMRKFYELMAAQGLSKK 57
          MDPRY+GE LKHLEKQNELL  AYNS+SHELHKLQVEEEMLMRKFY+LMAA GL KK
Sbjct: 1  MDPRYSGETLKHLEKQNELLMHAYNSVSHELHKLQVEEEMLMRKFYQLMAAHGLPKK 57