Jatropha Genome Database

JcCA0308171.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308171.30 - phase: 0 /pseudo/partial
         (195 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013758 transcription initiation factor, putative               139   6e-34
29751.m001874 transcription initiation factor, putative               130   5e-31

>30170.m013758 transcription initiation factor, putative
          Length = 925

 Score =  139 bits (351), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 77/144 (53%), Positives = 90/144 (62%), Gaps = 2/144 (1%)

Query: 54  VKTNRDEDDKXXXXXXXXXXXXXXXXXXXLSKWQLMAEQARQRREGGNEATSSSQSAKDV 113
           +  N++EDDK                   LSKWQLMAEQARQ+REGG EA S S SAK+V
Sbjct: 782 IPANKEEDDKMRTTAANVAARAAVGGDDHLSKWQLMAEQARQKREGGIEAASGSYSAKEV 841

Query: 114 GHNPRSTSGRNMKDNQEPEKXXXXXXXXXXXNLGKNQVM--QISVARTISVKDVIAVLER 171
              P+ TSG++MKDNQEPEK            +G+NQ    Q  VAR+ISVKDVIA LER
Sbjct: 842 TRKPQFTSGKSMKDNQEPEKRSPAAASTGVRKVGRNQAFTPQSKVARSISVKDVIAALER 901

Query: 172 EPQMSKSNLICRLHERTGSGAQTK 195
           EPQMSKS LI RL+ER  S A T+
Sbjct: 902 EPQMSKSTLIYRLYERVQSDAPTE 925


>29751.m001874 transcription initiation factor, putative
          Length = 927

 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 85/144 (59%), Gaps = 2/144 (1%)

Query: 51  AKSVKTNRDEDDKXXXXXXXXXXXXXXXXXXXLSKWQLMAEQARQRREGGNEATSSSQSA 110
           AK VK +++EDDK                   LSKWQLM EQARQ+RE G EA S  QSA
Sbjct: 736 AKPVKASKEEDDKMRTTAANVAARAAVGGDDMLSKWQLMVEQARQKREAGPEAASGIQSA 795

Query: 111 KDVGHNPRSTSGRNMKDNQEPEKXXXXXXXXXXXNLGKNQVM--QISVARTISVKDVIAV 168
           KDV   P  TSG+ +KD QEPEK             G+NQ +  Q   AR+ISVKDVIA 
Sbjct: 796 KDVFGKPLLTSGKAVKDGQEPEKRSAAVTSTGARRFGRNQSVAPQTRPARSISVKDVIAA 855

Query: 169 LEREPQMSKSNLICRLHERTGSGA 192
           LEREPQMSKS LI RL+ER  S A
Sbjct: 856 LEREPQMSKSTLIYRLYERMQSDA 879