Jatropha Genome Database

JcCA0308071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308071.10 - phase: 2 /pseudo/partial
         (304 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004746 DELLA protein GAI1, putative                            108   2e-24
30147.m013794 DELLA protein RGL1, putative                             89   2e-18
30190.m011131 DELLA protein RGL1, putative                             56   2e-08
29634.m002156 Chitin-inducible gibberellin-responsive protein, p...    52   3e-07
30073.m002204 transcription factor, putative                           51   8e-07
29872.m000537 DELLA protein RGA, putative                              50   9e-07

>29929.m004746 DELLA protein GAI1, putative
          Length = 507

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 63/78 (80%), Gaps = 2/78 (2%)

Query: 221 KPFEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRLRITGVGNSGERLEAI 280
           + FEGESSIHV+DLGM+LGLP G+QWRNL+H LAN      P+ LRITGVGNS ERL+A+
Sbjct: 239 EAFEGESSIHVVDLGMTLGLPHGEQWRNLLHCLANRPDKK-PRCLRITGVGNSAERLQAL 297

Query: 281 GNELECYARCMGFNNLEF 298
           G+EL+CYAR +G  N EF
Sbjct: 298 GDELDCYARSLGL-NFEF 314


>30147.m013794 DELLA protein RGL1, putative
          Length = 526

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 76/152 (50%), Gaps = 2/152 (1%)

Query: 147 LFLGRHFKELLLALFKGYLIGLCLFNHLGLSEFQLLQQKQLLVSHQRRMKPCAFSMKFCH 206
           L  G  F+ +    F+G    L L   LG           + ++  ++ +  +   + C 
Sbjct: 185 LVFGSSFQRVASCFFQGLADRLSLVQPLGTVSLVTPIMNIMDIASDKKEEALSLVYEICP 244

Query: 207 KSNLVILLQTXPYWKPFEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRLR 266
                  +      + FEGES +HV+DLGM+LGLP G QWR LI  LAN  +  PP RLR
Sbjct: 245 HIQFGHFVANSSILEAFEGESFVHVVDLGMTLGLPHGHQWRQLIQSLANR-AGKPPCRLR 303

Query: 267 ITGVGNSGERLEAIGNELECYARCMGFNNLEF 298
           IT VG    R + IG+EL  YA+ +G  NLEF
Sbjct: 304 ITAVGLCVGRFQTIGDELVEYAKDVGI-NLEF 334


>30190.m011131 DELLA protein RGL1, putative
          Length = 662

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 15/96 (15%)

Query: 203 KFCHKSNLVILLQTXPYWKPFEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPP 262
           KF H +   I L+       FEG+  +H+ID  +  GL    QW +L   LA  S  NPP
Sbjct: 371 KFIHFTENEIFLRA------FEGKDKVHIIDFDIKQGL----QWPSLFQSLA--SRTNPP 418

Query: 263 KRLRITGVGNSGERLEAIGNELECYARCMGFNNLEF 298
             +RITG+G S + L   G+ L  +A  +   NL F
Sbjct: 419 SHVRITGIGESKQELNETGDRLAGFAEAL---NLPF 451


>29634.m002156 Chitin-inducible gibberellin-responsive protein,
           putative
          Length = 608

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 21/138 (15%)

Query: 168 LCLFNHLGLSEFQLLQQKQLLVSHQRRMKPCAFSMKFCH-KSNLVILLQTXPYWKPFEGE 226
           LCL     L+ F+   ++   +S++     C +S KF H  +N  IL  T       EG 
Sbjct: 290 LCLQAEKSLAMFETSSEEDFTLSYKALNDACPYS-KFAHLTANQAILEAT-------EGA 341

Query: 227 SSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRLRITGV-----GNS-GERLEAI 280
           S IH++D G+     QG QW  L+  LA   SA  P  +RI+G+     G S    L A 
Sbjct: 342 SKIHIVDFGIV----QGVQWAALLQALATR-SAGRPLSIRISGIPAPVLGKSPAASLLAT 396

Query: 281 GNELECYARCMGFNNLEF 298
           GN L  +A+ +   N EF
Sbjct: 397 GNRLGDFAKLLDL-NFEF 413


>30073.m002204 transcription factor, putative
          Length = 843

 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 20/152 (13%)

Query: 149 LGRHFKELLLALFKGYLIGLCLFNHLGLSEFQLLQQKQLLVSHQRRMKPCAFSMKFCH-K 207
           +  +F E + A     LI  CL  +  L    L   +++  + Q       F +KF H  
Sbjct: 494 VAAYFSEAMSA----RLINSCLGIYATLPSMPLTHTQKMASAFQVFNGISPF-VKFSHFT 548

Query: 208 SNLVILLQTXPYWKPFEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRLRI 267
           +N  I        + FE E  +H+IDL +  GL    QW  L H LA+      P  +R+
Sbjct: 549 ANQAI-------QEAFEREDRVHIIDLDIMQGL----QWPGLFHILASRPGG--PPYVRL 595

Query: 268 TGVGNSGERLEAIGNELECYARCMGFNNLEFY 299
           TG+G S E LEA G  L  +A+ +G    EF+
Sbjct: 596 TGLGTSIEALEATGKRLSDFAQKLGL-PFEFF 626


>29872.m000537 DELLA protein RGA, putative
          Length = 442

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 18/152 (11%)

Query: 149 LGRHFKELLLALFKGYLIGLCLFNHLGLSEFQL-LQQKQLLVSHQRRMKPCAFSMKFCHK 207
           +G +F   L A     ++  CL  +  L+   L L Q Q + +  +     +  +KF H 
Sbjct: 117 VGSYFAHALQA----RVVSSCLGTYSPLTSKSLTLTQSQKIFNAFQSYNSISPLIKFSHF 172

Query: 208 SNLVILLQTXPYWKPFEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRLRI 267
           +    + Q        +GE  +HVID  +     QG QW  L H LA+ S     + +RI
Sbjct: 173 TANQAIFQA------LDGEDRVHVIDFDIM----QGLQWPGLFHILASRS--KKIRSMRI 220

Query: 268 TGVGNSGERLEAIGNELECYARCMGFNNLEFY 299
           TG G+S E LE+ G  L  +A  +G    EF+
Sbjct: 221 TGFGSSSELLESTGRRLADFASSLGL-PFEFH 251