Jatropha Genome Database

JcCA0307631.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307631.30 - phase: 0 
         (604 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29579.m000199 NADH-ubiquinone oxidoreductase, putative               1150   0.0  
31326.m000015 formate dehydrogenase, putative                          60   3e-09

>29579.m000199 NADH-ubiquinone oxidoreductase, putative
          Length = 744

 Score = 1150 bits (2974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/604 (91%), Positives = 574/604 (95%)

Query: 1   MKIKTDTPVAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRS 60
           MKIKTDTP+AKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRS
Sbjct: 141 MKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRS 200

Query: 61  VVDKNLGPLVKTVMTRCIQCTRCVRFATEIAGVQDLGMLGRGSGEEIGTYVEKLMTSELS 120
           VVDKNLGPLVKTVMTRCIQCTRCVRFATE+AGVQDLGMLGRGSGEEIGTYVEKLMTSELS
Sbjct: 201 VVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELS 260

Query: 121 GNVIDICPVGALTSKPFAFKARNWELKGTESIDVSDAVGSNIRIDSRGPEVMRIIPRLNE 180
           GNVIDICPVGALTSKPFAFKARNWELKGTESIDV+DAVGSNIRIDSRGPEVMRI+PRLNE
Sbjct: 261 GNVIDICPVGALTSKPFAFKARNWELKGTESIDVTDAVGSNIRIDSRGPEVMRIVPRLNE 320

Query: 181 DINEEWISDKTRFCYDGLKRQRLNDPMIRGTDGRFKAVSWRDALAVVAEVIHQVKPEEIV 240
           DINEEWISDKTRFCYDGLKRQRLNDPMIRG DGRFKAVSWRDALAVVAEV+HQVKPEEIV
Sbjct: 321 DINEEWISDKTRFCYDGLKRQRLNDPMIRGADGRFKAVSWRDALAVVAEVMHQVKPEEIV 380

Query: 241 GVAGKLSDAESMMALKDFLNKMGSNNVWCEGNGPNPNADLRSGYIMNSSISGLEKADVFL 300
           GVAGKLSDAESMMALKDFLNKMGS+NVWCEGNGP+PNADLRSGYIMNSSISGLEKADVFL
Sbjct: 381 GVAGKLSDAESMMALKDFLNKMGSDNVWCEGNGPSPNADLRSGYIMNSSISGLEKADVFL 440

Query: 301 LVGTQPRVEAAMVNARIRKTVRATNAKVGYIGPPSDFNYDCEHLGTGPQTLLEIAEGRHP 360
           LVGTQPRVEAAMVNARIRKTVRATNAKVGYIGPP+DFNYD EHLGT PQTLLEIAEGRHP
Sbjct: 441 LVGTQPRVEAAMVNARIRKTVRATNAKVGYIGPPTDFNYDSEHLGTDPQTLLEIAEGRHP 500

Query: 361 FYSKILNAKNPAIIVGAGIFERSDKDAIFSTVDAIAKKANVVRPDWNGFNVXXXXXXXXX 420
           F+S ILNAKNPAIIVGAGIFER+DKDAIFS V+AIAKK NVVRPDWNGFNV         
Sbjct: 501 FFSTILNAKNPAIIVGAGIFERTDKDAIFSAVEAIAKKGNVVRPDWNGFNVLLLNAAQAA 560

Query: 421 XXXXXXVPESSQSIESAKFVYLMGADDVNLDKLPNDAFLVYQGHHGDRGVYRANVILPAA 480
                 VPES +SIES KFVYLMGADDVNLDKLPNDAF+VYQGHHGDRGVYRANVILPA+
Sbjct: 561 ALDLGLVPESGKSIESGKFVYLMGADDVNLDKLPNDAFVVYQGHHGDRGVYRANVILPAS 620

Query: 481 AFTEKEGTYANTEGCAQQTLPAVPTVGDARDDWKIIRALSEVAGARLPYDSIGAIRSRIR 540
           AF+EKEGTY NTEGCAQ TLPAVPTVGDARDDWKIIRALSEV+GARLPYDS+GAIRSR+R
Sbjct: 621 AFSEKEGTYVNTEGCAQLTLPAVPTVGDARDDWKIIRALSEVSGARLPYDSLGAIRSRMR 680

Query: 541 NVAPNLLSLDEREPATFWASLKPECTQKISSTPFNASVENFYMTDAITRASKIMAQCSAL 600
            VAPNLLS+DEREPA F ASLKPECTQK+SSTPF ++VENFYMTDAITRASKIMAQCSAL
Sbjct: 681 TVAPNLLSIDEREPAIFGASLKPECTQKMSSTPFKSAVENFYMTDAITRASKIMAQCSAL 740

Query: 601 LLKK 604
           L KK
Sbjct: 741 LSKK 744


>31326.m000015 formate dehydrogenase, putative
          Length = 588

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 113/271 (41%), Gaps = 30/271 (11%)

Query: 75  TRCIQCTRCVRFATEIAGVQDLGMLGRGSGEEIGTYVEKLMTSEL--SGNVIDICPVGAL 132
           ++CI C+RCVR   E  G   L + GRG   ++    +  + SE    G  +  CP   L
Sbjct: 36  SKCIVCSRCVRACEETQGTFALTIQGRGFDSKVSAGGKDFLESECVSCGACVQACPTATL 95

Query: 133 TSKPFAFKARNWELKGTESIDVSDAVGSNIRIDSRGPEVMRIIPRLNEDINEEWISDKTR 192
             K     A   E K T +      VG +   + +G +V+R+ P      N      K R
Sbjct: 96  MEKT-VIDAGTPEHKITTTCAYC-GVGCSFDAEMKGEQVVRMTPTKEGGANHGHSCVKGR 153

Query: 193 FCYD-GLKRQRLNDPMIRGT-DGRFKAVSWRDALAVVAEVIHQVKP---EEIVG--VAGK 245
           F +       R+  PMIR +    ++ V W +A+   A  I +++    +E VG   + +
Sbjct: 154 FAWGYATHADRITTPMIRKSIHDPWQKVGWDEAINYAASEIQRIQAKYGKESVGGITSSR 213

Query: 246 LSDAESMMALKDFLNKMGSNNV-WCEGNGPNPNADLRSGYIMNSSIS---------GLEK 295
            ++ E  +  K      G+NNV  C     +P     +GY +  ++           + K
Sbjct: 214 CTNEEVYVTQKLIRAVFGTNNVDTCARVCHSP-----TGYGLKQTLGESAGTQTFDSVMK 268

Query: 296 ADVFLLVGTQPR----VEAAMVNARIRKTVR 322
           +DV  ++G  P     V  +++  R+R+  +
Sbjct: 269 SDVIFVMGANPTDGHPVFGSLMKRRLREGAK 299