Jatropha Genome Database

JcCA0307631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307631.20 - phase: 0 
         (83 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30073.m002281 Transcription elongation factor, putative               121   6e-29
29900.m001548 Transcription elongation factor, putative                92   5e-20
29726.m003928 Transcription elongation factor, putative                91   2e-19

>30073.m002281 Transcription elongation factor, putative
          Length = 83

 Score =  121 bits (304), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 65/81 (80%)

Query: 1  MARRKTKRVLKKPVRVEKLETTFTCPFCNHRHSVACVIDRKLGFGEAECSVCKVNYVTKI 60
          MARR+TKR  KKP+RVEKL T FTCPFCNH  SV C ID+K+  GEAEC +C  ++VTKI
Sbjct: 1  MARRRTKRAAKKPMRVEKLATAFTCPFCNHPDSVTCDIDKKVWVGEAECHICTESFVTKI 60

Query: 61 NPLTEPIDIYSEWIDECVGVN 81
          N LTEPIDIYSEWIDEC  VN
Sbjct: 61 NRLTEPIDIYSEWIDECERVN 81


>29900.m001548 Transcription elongation factor, putative
          Length = 88

 Score = 92.0 bits (227), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 56/81 (69%)

Query: 1  MARRKTKRVLKKPVRVEKLETTFTCPFCNHRHSVACVIDRKLGFGEAECSVCKVNYVTKI 60
          M +RK++       R++KL+T F+CPFCNH  SV C ID K   GEA C++C+ ++ T I
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCAICQESFSTTI 60

Query: 61 NPLTEPIDIYSEWIDECVGVN 81
            LTEPID+YSEWIDEC  VN
Sbjct: 61 TALTEPIDVYSEWIDECERVN 81


>29726.m003928 Transcription elongation factor, putative
          Length = 62

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 51/59 (86%)

Query: 1  MARRKTKRVLKKPVRVEKLETTFTCPFCNHRHSVACVIDRKLGFGEAECSVCKVNYVTK 59
          MARR++KR +KKP+RV+KL+T FTCPFCNH +SVAC IDRK+  GEA CS+CK +++TK
Sbjct: 1  MARRRSKRAVKKPMRVQKLDTVFTCPFCNHANSVACDIDRKIWVGEASCSICKASFMTK 59