Jatropha Genome Database

JcCA0307531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307531.10 + phase: 0 /partial
         (336 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29866.m000624 transcription initiation factor ia, putative            511   e-145

>29866.m000624 transcription initiation factor ia, putative
          Length = 640

 Score =  511 bits (1317), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 256/348 (73%), Positives = 296/348 (85%), Gaps = 12/348 (3%)

Query: 1   MGVELTQQFN-EMEDL-----NFSDSDLVYHVRDALISAKTGDNESYHQLVGVMHHSKRL 54
           MGVEL  Q+  E+ED+     N++DSDLVYHVRDAL S + GD  SY QLVGVMHHS+RL
Sbjct: 1   MGVELDSQYKKEIEDMEDDGVNYTDSDLVYHVRDALHSVQYGDTNSYDQLVGVMHHSQRL 60

Query: 55  SSDEVALLVTSLKALSGAVSCIDNIYHESLLSSIFGMSMWNYGPDVMDALLELVISLAAS 114
           + D+VALL+TSLKALSGAVS ID  +H+ LL SIFGMS+WNYGPDVM+ALLEL+I+LAAS
Sbjct: 61  TPDDVALLLTSLKALSGAVSYIDECHHDRLLQSIFGMSIWNYGPDVMEALLELIIALAAS 120

Query: 115 NVKYVDACLEMLVGNFVPPMYLVDVLKQPRGHGKKDQVLSRVHTALQDIAALVPMAALRL 174
           N KY+D CL+MLV NFVPPMYL+D+LK PRG  KK+QVLSR+HTAL+DIA L+PMAA RL
Sbjct: 121 NGKYIDPCLKMLVTNFVPPMYLIDILKLPRGQAKKEQVLSRLHTALEDIAHLIPMAASRL 180

Query: 175 SNVVV---HRMPTTYKKDL--ETDRLKYRTEIYVENMLRLESGAIREFVGNRMIMAVVDM 229
           S  VV    R+PTT+KKD   E DR+KYRTEIYVENMLRLESGAIREFVG+RM+MAVVD 
Sbjct: 181 STEVVSEIQRIPTTFKKDQYHEKDRVKYRTEIYVENMLRLESGAIREFVGSRMLMAVVDK 240

Query: 230 LVELDVAIGWDDILRDDSSKGIFAIELEEGD-IGSDDEENDIGEFPRTSTHKSLGKNVVA 288
           L++LDVAIGWDDILRDDS KGIFAIELE+ D +  DDE ND GE PRT +HKSLG+NV A
Sbjct: 241 LIDLDVAIGWDDILRDDSCKGIFAIELEDADEVSDDDEYNDYGELPRTLSHKSLGENVAA 300

Query: 289 DLLDGLMVQTFEHLELCANNKRLSEVFETLLDSFMITILNTYKSKFSQ 336
           DLLD LMV+ FEHLELCANNKRL++VFETLLDSFM+TILNTYKSKF+Q
Sbjct: 301 DLLDSLMVRIFEHLELCANNKRLNDVFETLLDSFMLTILNTYKSKFAQ 348