Jatropha Genome Database

JcCA0307381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307381.10 - phase: 0 /partial
         (515 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004537 conserved hypothetical protein                          864   0.0  

>29848.m004537 conserved hypothetical protein
          Length = 516

 Score =  864 bits (2232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/515 (80%), Positives = 459/515 (89%), Gaps = 2/515 (0%)

Query: 3   KMRLRNEIGIALVLFLLPNLFFITQ-ADSKCKAWLVQSIPTDMPQLRRVPGVLTTGDVLR 61
           K+  +  I IAL LFLL   +  T  ADS+CKAWLVQSIPTDMP L +V GVL+TGDVLR
Sbjct: 2   KLDYKISISIALFLFLLTYQWPKTVIADSQCKAWLVQSIPTDMPHLHQVSGVLSTGDVLR 61

Query: 62  WLAGNSTKGLDIIAQYWQLIANSKDPRSGDYGYSKSDMEKFGAFEGFGVYKAIENAADRN 121
           WLAGN+TKGLD+IAQYWQLIAN +DP SG+YGYS+ +M  FGAFEG  VYK+IE+AADRN
Sbjct: 62  WLAGNATKGLDVIAQYWQLIANPEDPSSGEYGYSEQNMTNFGAFEGSSVYKSIEDAADRN 121

Query: 122 VSIRLLQHSGVYPDFTKEPNDLASGRLNVDNVTLLLGEWWGSGIVHAKVWISDSRDVYIG 181
           VSIR LQHSGV PD+TKEP+D+ASGR NV+NVTLLLGEWWGSGIVHAKVWISD++ VYIG
Sbjct: 122 VSIRFLQHSGVSPDYTKEPDDIASGRENVENVTLLLGEWWGSGIVHAKVWISDNKQVYIG 181

Query: 182 SANNDWKSLTQVKEVGIYLVGCKKIVGKVETYFENLWKLAHLNSSAYTRSVWDQQWQINR 241
           SANNDWKSLTQVKEVGIYLVGCKKIV KVE YFENLW LAHL+SSAYT +VWDQQWQI+R
Sbjct: 182 SANNDWKSLTQVKEVGIYLVGCKKIVRKVENYFENLWTLAHLDSSAYTSTVWDQQWQISR 241

Query: 242 TVPCWSHFIDSKARCRSPLP-TFVEVPHVAGYPVLSDPHMIKVPIKTPGQRFSTLEPYLS 300
           TVPCWSHF+ SK RCRSPLP  FVEV HVAGYPVLSDPHM +VPI TPG   STLEP LS
Sbjct: 242 TVPCWSHFLHSKERCRSPLPHRFVEVSHVAGYPVLSDPHMFEVPIITPGNDDSTLEPELS 301

Query: 301 YLSFAPPELSFGKYQTDEQGWIDTIKSVGSGSTVRINTMDWLGQSQFTKEKVYWSSLSSA 360
           YLSFAPPELSFGK+QTDEQ W+DTIKSVGSG+TVRINTMDWLGQSQ+TK+KVYWS LSSA
Sbjct: 302 YLSFAPPELSFGKFQTDEQAWVDTIKSVGSGATVRINTMDWLGQSQYTKQKVYWSLLSSA 361

Query: 361 ISEVIFSKHATVKVLVAYWAHFIDNTDQYLKSLLYSDILCNSSKYNKCHGKVEIKYYVVP 420
           ISEV+FSKHATVK+LVAYWAHFI+NT+QYL SLLYS++LC+SSKYN C GKVEIKYYVVP
Sbjct: 362 ISEVVFSKHATVKILVAYWAHFINNTEQYLNSLLYSNVLCSSSKYNNCSGKVEIKYYVVP 421

Query: 421 GYNLTGPATRNGKRTGNKYPAFTRVNHGKYAVSDVRAHIGTSNLVWDYFYTTAGVSFGTY 480
           GYN TGPA  NG RTGN YPAF+RVNHGKYAVSDVRAHIGTSNLVWDYFYTTAG+SFGTY
Sbjct: 422 GYNQTGPAISNGTRTGNIYPAFSRVNHGKYAVSDVRAHIGTSNLVWDYFYTTAGISFGTY 481

Query: 481 NPAIVLQLQKIFDADWDSPYAVPFEGLEAGHAFSS 515
           NP IVLQLQ+IFDADW+SPYA+P EG  +GH+FSS
Sbjct: 482 NPTIVLQLQEIFDADWNSPYAIPVEGQGSGHSFSS 516