Jatropha Genome Database

JcCA0307371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307371.10 + phase: 0 
         (327 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29785.m000940 4-diphosphocytidyl-2-C-methyl-d-erythritol kinase,...   574   e-164

>29785.m000940 4-diphosphocytidyl-2-C-methyl-d-erythritol kinase,
           putative
          Length = 388

 Score =  574 bits (1480), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 275/326 (84%), Positives = 295/326 (90%)

Query: 1   MATAHLLCNNHIFNPSRHSFSKSNLPSTRPSGSVYFNQRQRVPLVKATKKQLEIVYDPDE 60
           MA+AH LCN+H+F PS +SF+K++LPS +P+GS+ F + QR+P +KATKKQLEIVYDPDE
Sbjct: 1   MASAHFLCNSHLFQPSCNSFAKTSLPSFKPAGSISFPRTQRIPFIKATKKQLEIVYDPDE 60

Query: 61  RLNKLADDVDKNAPLSRLTLFSPCKINVFLRITSKREDGYHDLASLFHVISLGDTIKFSL 120
           RLNKL D+VDK APLSRLTLFSPCKINVFLRIT KREDGYHDLASLFHVISLGDTIKFSL
Sbjct: 61  RLNKLGDEVDKIAPLSRLTLFSPCKINVFLRITDKREDGYHDLASLFHVISLGDTIKFSL 120

Query: 121 SPSKSKDRLSTNVSGVPLDERNLVIKALNLYRKKTGTDNFFWIHLDKKVPXXXXXXXXXX 180
           SPSKS DRLSTNV+GVPLDERNL+IKALNLYRKKTGTDNFFWIHLDKKVP          
Sbjct: 121 SPSKSTDRLSTNVAGVPLDERNLIIKALNLYRKKTGTDNFFWIHLDKKVPTGAGLGGGSS 180

Query: 181 XXXXXXWAANQFSGGIATENDLLEWSSEIGSDISFFFSHGAAYCTGRGEIVQDIPSPVPL 240
                 WAANQFSGG+ATE DLLEWSSEIGSDISFFFS GAAYCTGRGEIVQDIPSPVPL
Sbjct: 181 NAATALWAANQFSGGLATEKDLLEWSSEIGSDISFFFSRGAAYCTGRGEIVQDIPSPVPL 240

Query: 241 DIPMVLIKPQEACPTGEVYKRFRLDQTSQVDPLTLLEKISNSGISQDVCINDLEPPAFEV 300
           DIPMVLIKPQEACPTGEVYKRFRLDQTSQVDPLTLL+KIS SGISQDVCINDLEPPAFEV
Sbjct: 241 DIPMVLIKPQEACPTGEVYKRFRLDQTSQVDPLTLLDKISKSGISQDVCINDLEPPAFEV 300

Query: 301 LPSLKRLKQRIMAASRGQYDAVFMSG 326
           LPSLKRLKQRI+AASRGQY+AVFMSG
Sbjct: 301 LPSLKRLKQRIVAASRGQYNAVFMSG 326