Jatropha Genome Database

JcCA0307051.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307051.30 - phase: 0 
         (243 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27613.m000623 40S ribosomal protein S8, putative                      291   2e-79
29447.m000031 40S ribosomal protein S8, putative                      291   2e-79

>27613.m000623 40S ribosomal protein S8, putative
          Length = 219

 Score =  291 bits (746), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/178 (82%), Positives = 150/178 (84%), Gaps = 4/178 (2%)

Query: 54  KPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNEL 113
           +PA+TKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNEL
Sbjct: 32  QPASTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNEL 91

Query: 114 VRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKK 173
           VRTQTLVKSAI+QVDAAPFKQWYLQHYGVDIGR                         KK
Sbjct: 92  VRTQTLVKSAIIQVDAAPFKQWYLQHYGVDIGR----KKKTAAAKKEGEEGEAATEEVKK 147

Query: 174 SNHVQRKLEKRQKDRKLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYM 231
           SNHV RKLEKRQ+ RKLDPHIEEQFG GRLLACISSRPGQCGRADGYILEGKELEFYM
Sbjct: 148 SNHVLRKLEKRQQIRKLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYM 205


>29447.m000031 40S ribosomal protein S8, putative
          Length = 221

 Score =  291 bits (745), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 147/178 (82%), Positives = 148/178 (83%), Gaps = 2/178 (1%)

Query: 54  KPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNEL 113
           + ANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNEL
Sbjct: 32  QAANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNEL 91

Query: 114 VRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKK 173
           VRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR                         KK
Sbjct: 92  VRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR--KKKTVAKKETEEGEGEGAAAEESKK 149

Query: 174 SNHVQRKLEKRQKDRKLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYM 231
           SNHV RKLEKRQKDRKLD HIEEQF  GRLLACISSRPGQCGRADGYILEGKELEFYM
Sbjct: 150 SNHVIRKLEKRQKDRKLDAHIEEQFWGGRLLACISSRPGQCGRADGYILEGKELEFYM 207