Jatropha Genome Database

JcCA0306971.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306971.20 + phase: 0 /partial
         (217 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30153.m000741 porphobilinogen deaminase, putative                     320   4e-88

>30153.m000741 porphobilinogen deaminase, putative
          Length = 372

 Score =  320 bits (819), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 166/217 (76%), Positives = 179/217 (82%), Gaps = 10/217 (4%)

Query: 1   MEALSSLYTSQGLMMSRPSSPVIFRASGSVSVIGFSLPCFQTRVFPNCIKKRSFSVPRAS 60
           M+ LSS+ T QGLM+ RP       A+ SVSV+G SLP F++   PNCIKK+S  + RAS
Sbjct: 1   MDTLSSISTMQGLMVPRP-------AAVSVSVLGSSLPQFKS---PNCIKKQSLRITRAS 50

Query: 61  VAVEQQTQESKLALIRIGTRGSPLALAQAYETRDKLMATHSELAEEGAIQIVIIKTTGDK 120
           VAVEQQTQ+ K+ALIRIGTRGSPLALAQA+ETRDKLMA HSELAEEGAIQIVIIKTTGDK
Sbjct: 51  VAVEQQTQDPKVALIRIGTRGSPLALAQAHETRDKLMAKHSELAEEGAIQIVIIKTTGDK 110

Query: 121 ILSQPLADIGGKGLFTKEIDEALINGEIDIAVHSMKDVPTYLPEKTILPCNLEREDVRDA 180
           IL+QPLADIGGKGLFTKEIDEALINGEIDIAVHSMKDVPTYLPEKTILPCNL REDVRDA
Sbjct: 111 ILTQPLADIGGKGLFTKEIDEALINGEIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDA 170

Query: 181 FIXXXXXXXXXXXXXXVIGTASLRRKSQILHRYASLS 217
           FI              VIGTASLRRKSQILHRY SLS
Sbjct: 171 FISLSASSLAELPSGSVIGTASLRRKSQILHRYPSLS 207