Jatropha Genome Database

JcCA0306971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306971.10 - phase: 0 
         (102 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29762.m000499 conserved hypothetical protein                          181   8e-47
30204.m001744 conserved hypothetical protein                          174   1e-44
29904.m002927 conserved hypothetical protein                           69   5e-13
29660.m000766 conserved hypothetical protein                           47   1e-06

>29762.m000499 conserved hypothetical protein
          Length = 99

 Score =  181 bits (458), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 91/97 (93%), Positives = 91/97 (93%), Gaps = 3/97 (3%)

Query: 3  SGVIGQTPEEDKKPNDQSA-HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFN 61
          SGV  Q  EEDKKP DQSA HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFN
Sbjct: 2  SGVTNQ--EEDKKPTDQSAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFN 59

Query: 62 SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 98
          SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 60 SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 96


>30204.m001744 conserved hypothetical protein
          Length = 108

 Score =  174 bits (440), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/88 (93%), Positives = 86/88 (97%)

Query: 11  EEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDGR 70
           EEDKKP DQ+AHINLKVKGQDGNE+FFRIKRSTQL+KL+ AYCDRQSVEFNSIAFLFDGR
Sbjct: 16  EEDKKPMDQTAHINLKVKGQDGNEMFFRIKRSTQLRKLITAYCDRQSVEFNSIAFLFDGR 75

Query: 71  RLRGEQTPDELEMEDGDEIDAMLHQTGG 98
           RLRGEQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 76  RLRGEQTPDELEMEDGDEIDAMLHQTGG 103


>29904.m002927 conserved hypothetical protein
          Length = 94

 Score = 68.9 bits (167), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 49/76 (64%)

Query: 23 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDGRRLRGEQTPDELE 82
          I ++V+ QDG E  FRIK  TQ+ KL+  YC+ +  E ++  FL +G R   ++TP +L 
Sbjct: 7  ITVRVRSQDGREKVFRIKMDTQMSKLIARYCEDRQWEPHTAEFLLNGLRFPRDKTPAQLN 66

Query: 83 MEDGDEIDAMLHQTGG 98
          ++D   I+AM+HQ GG
Sbjct: 67 LKDNVLIEAMMHQNGG 82


>29660.m000766 conserved hypothetical protein
          Length = 229

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%)

Query: 37  FRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQT 96
           FR+ +  + ++L   Y D+  V+  ++AF FDG ++    TPD L MED D I+  + ++
Sbjct: 170 FRVYKDDKFERLFKVYADKVKVDIQNLAFSFDGDKISPTATPDSLGMEDDDIIEVHVKKS 229