Jatropha Genome Database

JcCA0306831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306831.10 - phase: 0 /pseudo/partial
         (151 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28725.m000310 RNA splicing protein mrs2, mitochondrial, putative      133   3e-32
30099.m001730 RNA splicing protein mrs2, mitochondrial, putative       70   3e-13
29883.m002003 RNA splicing protein mrs2, mitochondrial, putative       68   2e-12
29844.m003172 RNA splicing protein mrs2, mitochondrial, putative       67   2e-12
30099.m001729 RNA splicing protein mrs2, mitochondrial, putative       64   3e-11
30131.m006875 RNA splicing protein mrs2, mitochondrial, putative       61   2e-10

>28725.m000310 RNA splicing protein mrs2, mitochondrial, putative
          Length = 453

 Score =  133 bits (335), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 98/188 (52%), Gaps = 41/188 (21%)

Query: 1   VRDVIEHMLDDDEDMANLYLTRKLIQVQELEAMFGGA*HSNRTTTINAQAPHLHRLGSK- 59
           VRD IEH+LDD+EDMA+LYLTRK IQ Q+ EA+ G A     + +I    PHL RL S  
Sbjct: 268 VRDEIEHLLDDNEDMADLYLTRKWIQNQQSEALLGAA----ASNSIITATPHLPRLNSSR 323

Query: 60  ------------------------------------MSVREYINVAEDNVNVQLDDERNE 83
                                               +SVREYI+  ED VN+QLD++RNE
Sbjct: 324 SASLVTGSILDENDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNE 383

Query: 84  LIQLQLMLKSSVVSISLQLAICGALSMNFSCVWYEMHGIFGHTVSGIVIVGFSFFMFILR 143
           LIQLQL L  +  +I++   +     MN  C  YEM G+FG+ V       F  FM +L 
Sbjct: 384 LIQLQLTLTIASFAIAMDTLLASFFGMNIPCRLYEMDGVFGYFVGSTSAACFLLFMLVLG 443

Query: 144 YAKWKNLV 151
           YA+WK L+
Sbjct: 444 YARWKKLL 451


>30099.m001730 RNA splicing protein mrs2, mitochondrial, putative
          Length = 451

 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 43/192 (22%)

Query: 1   VRDVIEHMLDDDEDMANLYLTRKLIQVQELEAMFGGA*HSN------------------- 41
           VRD +EH+LDDDEDMA +YLT KL  VQ LE     + + N                   
Sbjct: 261 VRDELEHLLDDDEDMAEMYLTEKL--VQNLENSSASSLNENMDDEYDQTDLDDRDSHGTH 318

Query: 42  RTTTINAQAPHLH-----------------RLGSKMSVREYINVAEDNVNVQLDDERNEL 84
            +TT +A + HL                   L    ++REY++  ED +N+ LDD++N L
Sbjct: 319 TSTTRSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHL 378

Query: 85  IQLQLMLKSSVVSISLQLAICGALSMNFSCVWYEMHGIFGH-----TVSGIVIVGFSFFM 139
           +Q+ +ML ++ + IS  + + G   MN S   +      G      TV G        ++
Sbjct: 379 LQMGVMLTTATLVISCCVVVAGIFGMNISIELFNEQMETGMQKFLWTVGGSCAGSVFLYV 438

Query: 140 FILRYAKWKNLV 151
             + + K K L+
Sbjct: 439 VAIAWCKQKRLL 450


>29883.m002003 RNA splicing protein mrs2, mitochondrial, putative
          Length = 392

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 61  SVREYINVAEDNVNVQLDDERNELIQLQLMLKSSVVSISLQLAICGALSMNFSCVWYEMH 120
           ++REYI+  ED +N+QLD+ RN+LIQL+L L S  V +S+   +     MN    W E H
Sbjct: 299 TLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVAAIFGMNLQYTWREGH 358

Query: 121 G-IFGHTVSGIVIVGFSFFMFILRYAKWKNLV 151
           G +F   V    ++  + F  I+ YA+ K LV
Sbjct: 359 GYVFKWVVILTSLICATLFASIISYARHKGLV 390


>29844.m003172 RNA splicing protein mrs2, mitochondrial, putative
          Length = 398

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 5/94 (5%)

Query: 61  SVREYINVAEDNVNVQLDDERNELIQLQLMLKSSVVSISLQLAICGALSMNFSCVWYEMH 120
           ++REYI+  ED +N+QLD+ RN+LIQL+L L +  V +S    + G   MN    W + +
Sbjct: 305 TLREYIDDTEDYINIQLDNHRNQLIQLELFLSAGTVCLSFYSLVAGIFGMNIPYTWNDNY 364

Query: 121 GIFGHTVSGIVIVG---FSFFMFILRYAKWKNLV 151
           G     V  +++ G    + F+ I+ YA++K LV
Sbjct: 365 GYMFKWV--VIVTGACCAAMFILIMSYARYKGLV 396


>30099.m001729 RNA splicing protein mrs2, mitochondrial, putative
          Length = 456

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 45/194 (23%)

Query: 1   VRDVIEHMLDDDEDMANLYLTRKLIQVQELEAMFGGA*--------------------HS 40
           VRD +EH+LDDDEDMA +YLT K    Q LE     +                     H 
Sbjct: 264 VRDELEHLLDDDEDMAEMYLTEK--STQHLENSCTSSLNERDDMDDEYVQDDFDERDSHG 321

Query: 41  NRT-TTINAQAPHLH-----------------RLGSKMSVREYINVAEDNVNVQLDDERN 82
            R+ TT +A + HL                   L    ++REY++  ED +N+ LDD++N
Sbjct: 322 TRSSTTQSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQN 381

Query: 83  ELIQLQLMLKSSVVSISLQLAICGALSMNFSCVWYEMH-----GIFGHTVSGIVIVGFSF 137
            L+Q+ +ML ++ + IS  + + G   MN     ++         F  TV G        
Sbjct: 382 HLLQMGVMLTTATLIISFGIVVAGIFGMNIKIELFKEAVETGMPKFLWTVGGSCAGSLFL 441

Query: 138 FMFILRYAKWKNLV 151
           ++  + + K K L+
Sbjct: 442 YVVAIAWCKHKRLL 455


>30131.m006875 RNA splicing protein mrs2, mitochondrial, putative
          Length = 447

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 59/206 (28%)

Query: 1   VRDVIEHMLDDDEDMANLYLTRKLIQVQELEAMF-------------GGA*HSNRTTTIN 47
           VRD IE ++DDD DMA +YLT K      +E+ F             GG   S   + ++
Sbjct: 244 VRDEIEQLMDDDGDMAEMYLTEK---KGRMESSFYGDQSLMGFRSNDGGISLSAPVSPVS 300

Query: 48  AQAPHLHRLGSKMSV------------------------------------------REY 65
           +  P   RL   +S+                                          +EY
Sbjct: 301 S-PPDSRRLEKSLSIARSRHESMKSSESATESIEQLEMLLEAYFVVIDSTLNKLTSLKEY 359

Query: 66  INVAEDNVNVQLDDERNELIQLQLMLKSSVVSISLQLAICGALSMNFSCVWYEMHGIFGH 125
           I+  ED +N+QLD+ RN+LIQ +L+L ++   +++   + G   MNF+   ++    F  
Sbjct: 360 IDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPMFDDPRAFKW 419

Query: 126 TVSGIVIVGFSFFMFILRYAKWKNLV 151
            +    + G + F   + + K++ L+
Sbjct: 420 VLIITGVAGITIFCAFVWFFKYRRLM 445