Jatropha Genome Database

JcCA0306761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306761.10 - phase: 2 /TE/partial
         (374 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014167 5'->3' exoribonuclease, putative                        647   0.0  
30128.m008637 5'->3' exoribonuclease, putative                        483   e-137
30055.m001624 5'->3' exoribonuclease, putative                        377   e-105
30073.m002213 5'->3' exoribonuclease, putative                        375   e-104

>30170.m014167 5'->3' exoribonuclease, putative
          Length = 1113

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/372 (83%), Positives = 325/372 (87%), Gaps = 2/372 (0%)

Query: 5   QPSPTSFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXXXXXXXXX 64
           +PSPTSF+EVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQ             
Sbjct: 68  RPSPTSFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDREE 127

Query: 65  XXXXXXXXXXXXXXXGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYIHLRLNYDPG 124
                          GRKLPPKE SQ FDSN+ITPGTEFMAVLSIALQYYIHLRLN DPG
Sbjct: 128 AAAEEERLRQEFEREGRKLPPKESSQVFDSNIITPGTEFMAVLSIALQYYIHLRLNNDPG 187

Query: 125 WKKIKVILSDANVPGEGEHKIMSYIRLQRNLPGYNPNTRHCLYGLDADLIMLALATHEVH 184
           WKK+KVILSDANVPGEGEHK+MSYIRLQRNLPGY+PNTRHCLYGLDADLIMLALATHE+H
Sbjct: 188 WKKVKVILSDANVPGEGEHKVMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEIH 247

Query: 185 FSILREVVFTPGQQDKCFLCGQMGHLAAGCEGKAKRKAGEFDEKGGEAVAVKKPYQFLNI 244
           FSILRE+VFTPGQQDKCFLCGQMGHLAA CEGKAKRKAGEFDEKG E    KKPYQFLNI
Sbjct: 248 FSILREIVFTPGQQDKCFLCGQMGHLAADCEGKAKRKAGEFDEKGDEGAVAKKPYQFLNI 307

Query: 245 WTLREYLEFEMRIPNPPFDIDFERVVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAV 304
           WTLREYLE EMRIPNPPF IDFE +VDDFIFMCFFVGNDFLPHMPTLEIREGAINLL+AV
Sbjct: 308 WTLREYLELEMRIPNPPFKIDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAV 367

Query: 305 YKKEFSTMGGYLTDASKPNLSNVEHFIQAVGSYEDKIFQKRARLHQRQSERIKREKAQ-- 362
           YKKEF+ MGGYLTD  KPNLS VEHFIQAVGSYEDKIFQKRARLHQRQSERIKREKAQ  
Sbjct: 368 YKKEFTAMGGYLTDGCKPNLSKVEHFIQAVGSYEDKIFQKRARLHQRQSERIKREKAQSR 427

Query: 363 ARRGDDAEPQFK 374
           +RRGDDA+PQ +
Sbjct: 428 SRRGDDAQPQVQ 439


>30128.m008637 5'->3' exoribonuclease, putative
          Length = 964

 Score =  483 bits (1242), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/368 (63%), Positives = 280/368 (76%), Gaps = 2/368 (0%)

Query: 5   QPSPTSFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXXXXXXXXX 64
           +P P ++D+VF+ +FDYID LF +VRPRKLL+MAIDGVAPRAKMNQQ             
Sbjct: 69  KPPPPTYDDVFKSIFDYIDHLFTLVRPRKLLFMAIDGVAPRAKMNQQRSRRFRAAKDAAE 128

Query: 65  XXXXXXXXXXXXXXXGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYIHLRLNYDPG 124
                          G+ L PKE+ +T DSNVITPGT+FMAVLS  LQYY+ +RLN++PG
Sbjct: 129 AEAEEERLRKEFEAEGKLLSPKEKPETSDSNVITPGTQFMAVLSTGLQYYVQMRLNHNPG 188

Query: 125 WKKIKVILSDANVPGEGEHKIMSYIRLQRNLPGYNPNTRHCLYGLDADLIMLALATHEVH 184
           WK  KVILSDANVPGEGEHK+MSYIRLQRNL G+NPNTRHCLYGLDADLIMLALATHE+H
Sbjct: 189 WKYTKVILSDANVPGEGEHKVMSYIRLQRNLSGFNPNTRHCLYGLDADLIMLALATHEIH 248

Query: 185 FSILREVVFTPGQQDKCFLCGQMGHLAAGCEGKAKRKAGEFDEKGGEAVAVKKPYQFLNI 244
           FSILRE+V  PGQQ+KCF CGQ GHLAA C GK      +++ +    +  KK YQFLNI
Sbjct: 249 FSILREMVTFPGQQEKCFSCGQTGHLAADCRGKPGDNPLDWNVEDDVPIHKKK-YQFLNI 307

Query: 245 WTLREYLEFEMRIPNPPFDIDFERVVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAV 304
           W LREYL++E+ +PNPP +I+FER++DDF+F+CFFVGNDFLPHMPTLEIREGAINLL+ V
Sbjct: 308 WVLREYLQYELDVPNPPLEINFERILDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHV 367

Query: 305 YKKEFSTMGGYLTDASKPNLSNVEHFIQAVGSYEDKIFQKRARLHQRQSERIKREKAQAR 364
           Y++EFS MGGYLTDA + NL  VEHFIQ+V  YE++IFQKR R+ Q+  E  +  + +AR
Sbjct: 368 YRREFSAMGGYLTDAGEVNLDRVEHFIQSVAIYEEQIFQKRTRI-QQFLENNEEMRLKAR 426

Query: 365 RGDDAEPQ 372
           R    E Q
Sbjct: 427 RESSEEIQ 434


>30055.m001624 5'->3' exoribonuclease, putative
          Length = 993

 Score =  377 bits (968), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/361 (53%), Positives = 239/361 (66%), Gaps = 17/361 (4%)

Query: 8   PTSFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXXXXXXXXXXXX 67
           PT+FDEVF  ++ YID +F +VRPR LLY+AIDGVAPRAKMNQQ                
Sbjct: 52  PTTFDEVFNNIYKYIDHIFSIVRPRNLLYLAIDGVAPRAKMNQQRSRRFRNAKDTEIAEA 111

Query: 68  XXXXXXXXXXXXGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYIHLRLNYDPGWKK 127
                       G+++ PK+ S+  DSN+ITPGTEFM  LSI LQ Y+   +N DP WK 
Sbjct: 112 EEERLRKEYEIQGKQVLPKQYSEVSDSNIITPGTEFMFTLSIKLQEYMISNINSDPAWKA 171

Query: 128 IKVILSDANVPGEGEHKIMSYIRLQRNLPGYNPNTRHCLYGLDADLIMLALATHEVHFSI 187
           IKVILSDA+VPGEGEHKIMS+IR QR LP YNPNTRHCLYGLDADLIMLALA+HEVHFSI
Sbjct: 172 IKVILSDASVPGEGEHKIMSFIRQQRMLPDYNPNTRHCLYGLDADLIMLALASHEVHFSI 231

Query: 188 LREVVFTPGQQDKCFLC--GQMGHLAAG----CEGKAKRKAGEFDEKGGEAVA-VKKPYQ 240
           LREVV     Q  C        G +  G     E K KR+    D    + V+ ++KPYQ
Sbjct: 232 LREVVLLQQPQSICLSAHTSLQGRIEFGEFGSSENKTKRRFSNDDNTLAKDVSFIEKPYQ 291

Query: 241 FLNIWTLREYLEFEMRIPNPP--FDIDFERVVDDFIFMCFFVGNDFLPHMPTLEIREGAI 298
           FL++W LR+YL+ EM I +PP  F  D ER++DDF+FMCFF GNDF+P++PTL+I E A+
Sbjct: 292 FLHVWILRDYLKLEMDIYDPPENFTFDSERIIDDFVFMCFFAGNDFIPNLPTLQIHERAV 351

Query: 299 NLLIAVYKKEFSTMGGYLTDASKPN--------LSNVEHFIQAVGSYEDKIFQKRARLHQ 350
           +LL+ VYKK F  +GGYL D  + N        L  VE FI  +G+YE+ IF+KR+ L +
Sbjct: 352 DLLMTVYKKNFKKLGGYLVDVHQVNSLKNDYLDLKRVEKFILLIGAYEEMIFKKRSELRE 411

Query: 351 R 351
           R
Sbjct: 412 R 412


>30073.m002213 5'->3' exoribonuclease, putative
          Length = 1545

 Score =  375 bits (964), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/369 (53%), Positives = 245/369 (66%), Gaps = 25/369 (6%)

Query: 6   PSPTSFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXXXXXXXXXX 65
           P P +++EVF+ +F YID++F MVRPRKLL++ IDGVAPRAKMNQQ              
Sbjct: 69  PPPKTYEEVFRNVFMYIDKIFSMVRPRKLLFLGIDGVAPRAKMNQQRSRRFRAAKEAEKE 128

Query: 66  XXXXXXXXXXXXXXGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYIHLRLNYDPGW 125
                            L   +E    DSNVITPGTEFM +LS AL+YYI LR+N D GW
Sbjct: 129 ALKMKQFIELEGENSTSL---KEPAVLDSNVITPGTEFMDLLSSALRYYIRLRVNRDSGW 185

Query: 126 KKIKVILSDANVPGEGEHKIMSYIRLQRNLPGYNPNTRHCLYGLDADLIMLALATHEVHF 185
           + IKVILSD+NVPGEGEHKIMSYIRLQR+LPGY+PNTRHCLYGLDADLIMLALATHEVHF
Sbjct: 186 RGIKVILSDSNVPGEGEHKIMSYIRLQRDLPGYDPNTRHCLYGLDADLIMLALATHEVHF 245

Query: 186 SILREVVFTPGQQDKCFLCGQMGHLAAGCEGK---------AKRKAGEFDEKGGEAVAVK 236
           +ILREV            C Q      G + K           +K      K  E    +
Sbjct: 246 TILREV------------CAQKHSSKRGKKHKFVWNPQKKANSKKKKWMPVKTLEEYVSR 293

Query: 237 KPYQFLNIWTLREYLEFEMRIPNPPFDIDFERVVDDFIFMCFFVGNDFLPHMPTLEIREG 296
             ++FL IW LRE+LE++MRIPN     D ER++DDFIFMC FVGNDFLPH+PTLEI +G
Sbjct: 294 LNFKFLYIWALREHLEYDMRIPNLALQTDLERLIDDFIFMCLFVGNDFLPHIPTLEISQG 353

Query: 297 AINLLIAVYKKEFSTMGGYLTDASKPNLSNVEHFIQAVGSYEDKIFQKRARLHQRQSERI 356
           AI+LL+ VY+KEF  MGGYLT++ + +L+ VEHFIQAVG ++D IF++  +  + +S R 
Sbjct: 354 AIDLLMKVYRKEFRRMGGYLTNSFELDLTRVEHFIQAVGLHDDAIFRQHIQKLKEKSAR- 412

Query: 357 KREKAQARR 365
           K E++  R+
Sbjct: 413 KEERSSKRK 421