Jatropha Genome Database

JcCA0306451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306451.20 - phase: 0 
         (115 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003276 DNA-directed RNA polymerase II, putative                157   1e-39

>29889.m003276 DNA-directed RNA polymerase II, putative
          Length = 266

 Score =  157 bits (396), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 72/80 (90%), Positives = 75/80 (93%)

Query: 36  QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
           QE A++NCVYRNEVHHS AERTQVLQDVAADPTLPRTKAV CQVCKH EAVFFQATARGE
Sbjct: 187 QEIAESNCVYRNEVHHSAAERTQVLQDVAADPTLPRTKAVECQVCKHPEAVFFQATARGE 246

Query: 96  EGMTLFFVCCNPNCGHRWRE 115
           EGMTLFFVCCNP CGHRWR+
Sbjct: 247 EGMTLFFVCCNPICGHRWRD 266



 Score = 85.9 bits (211), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 45/55 (81%)

Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA 90
          QE AD+N VYRNE+HHSV+E TQ+LQDVA+DPTLPRTK+V C  C H EAVF Q 
Sbjct: 35 QEVADSNRVYRNEIHHSVSEHTQILQDVASDPTLPRTKSVRCSACGHGEAVFLQG 89