Jatropha Genome Database

JcCA0306451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306451.10 + phase: 0 /pseudo/partial
         (1182 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003277 WD-repeat protein, putative                             713   0.0  
30076.m004662 WD-repeat protein, putative                             413   e-115

>29889.m003277 WD-repeat protein, putative
          Length = 1519

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/591 (61%), Positives = 436/591 (73%), Gaps = 44/591 (7%)

Query: 598  EDTAADTSDVVNTMTNGKEHLNFNECMDSDELPMVGHTANGNDSSLEFKESNIPISTKLR 657
            EDT A+T    N M NGKEH + N C+D  ELP + H  NGND+S E  + + PI TKL+
Sbjct: 967  EDTGAETPQAANNMPNGKEHPSLNGCIDFSELPKLTHMVNGNDNSFEINKGSTPIPTKLQ 1026

Query: 658  IKSRMISRES--SENQGNEGSCILPASLAENTDTPVLEVPKNERTNRTTPVNEGDEFQEP 715
            IK R ISR+S   EN+G + S   PA + +N   P+ EVP+ +RTNR  PVNE DEF+E 
Sbjct: 1027 IKFRKISRDSFSQENEGVDLSLDSPAGMRQN---PISEVPEYDRTNRFAPVNEHDEFREL 1083

Query: 716  NAQVDKISMPLLNDTIGSNTHPKKMFNVVYRRSKLSKDRANSEGDSGTREGVSHASADEQ 775
            + Q+D+ S+  L+D++GS + PK M+NVVYRRSKLS+DRANSEGDSG RE +SH+  +E 
Sbjct: 1084 DVQIDEGSVASLDDSMGSQSRPKNMYNVVYRRSKLSRDRANSEGDSGIRESISHSITEEH 1143

Query: 776  YTGCILHEDITDGPHRTDITGSKATTDDLMNCNIKLGQEHDSDDVCRNADNGSISSRCQL 835
                 L+E  TDG HR+ + G +A  DD +NC +KLGQE  S+D  RN  NGS +SRCQL
Sbjct: 1144 SARYDLNER-TDGAHRSHLMGLQAEIDDPVNCIMKLGQELKSEDTNRNLHNGS-TSRCQL 1201

Query: 836  PSEEWGSSSRMTVGLRSSRNRRTSYHFRDASPVDRRKANQSGKKVSWLMLSKHEEGSRYI 895
              +EW SSSRMTVG+RS+R+RR SYHFRDASPV+RRK++Q  K+ SWLMLS HEEGSRYI
Sbjct: 1202 SGKEWRSSSRMTVGIRSTRSRRPSYHFRDASPVNRRKSHQPAKR-SWLMLSMHEEGSRYI 1260

Query: 896  PQQGDEVVYFRQGHQEYIDYIG----SRETGPWKSVKGHIRAVEFCKLEALEYSTLPGSG 951
            PQ GDEVVY RQGHQEY +       S+E GPWKSVKGHIRAVEFCK+E LEYST P +G
Sbjct: 1261 PQLGDEVVYLRQGHQEYKEVCKDQNVSKEPGPWKSVKGHIRAVEFCKVEGLEYSTTP-AG 1319

Query: 952  DSCCKMTLKFVDSTSDVCQKSFKLTLPEVTGFPDFLVERTRFDAAMRRNWTCRDKCRVYW 1011
            D CCKMTL FVD TSDV +K+FKL+LPEVTGFPDFLVERTRFDAAM+RNWT RDKC+V+W
Sbjct: 1320 DGCCKMTLIFVDPTSDVFEKTFKLSLPEVTGFPDFLVERTRFDAAMQRNWTSRDKCKVWW 1379

Query: 1012 KNDGEGDGSWWEGRILSVKAKTSEFPDSPWERYTIQYRSDPRETHQHSPWELFDFDSQWE 1071
            KN+GE DGSWW+ R++SVK K+SEFPDSPWER T++Y+SDP E H HSPWELFD D+QWE
Sbjct: 1380 KNEGEEDGSWWDCRVVSVKPKSSEFPDSPWERCTVKYKSDPSEEHHHSPWELFDDDTQWE 1439

Query: 1072 QPHIDDEIRNKLISAFAKLEQSGNTEQDRYGIQKLRQVSQKTNFTNRYPVPLSLEVIQSR 1131
            QPHIDDEIRNKL+SA AKLEQSG   Q                               SR
Sbjct: 1440 QPHIDDEIRNKLMSALAKLEQSGKRAQ-------------------------------SR 1468

Query: 1132 LENYYYRTLEAVKHDIEVMLTNSESYFIKNLELSGKMKRLSGWFKKTLSSL 1182
            LEN YYRT EA+KHDI VML+N+E +F KN +L+ KMKRLS WF++TLSSL
Sbjct: 1469 LENNYYRTFEALKHDIRVMLSNAEVHFAKNADLAAKMKRLSEWFERTLSSL 1519



 Score =  531 bits (1368), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/324 (79%), Positives = 284/324 (87%)

Query: 96  DGTSIILSDDVGQLYILNTGQGESQQDAKYDQFFLGDYRPLMQDTYGNIIDQETQLVPYR 155
           DGTSIILSDDVGQLYILNTGQGESQQDAKYDQFFLGDYRP++QDTYGN++DQETQLVPYR
Sbjct: 645 DGTSIILSDDVGQLYILNTGQGESQQDAKYDQFFLGDYRPVIQDTYGNVLDQETQLVPYR 704

Query: 156 RNMQDLLCDSGMNPYPEPYQSMYQKRRLGALNMEWKPPSIKLTVVPDFSLDPDFQMLPLA 215
           RNMQDLLCDSGMNPYPEPYQSMYQKRRLGALNM+WKPPSIKL V PDFSLDP++QMLPLA
Sbjct: 705 RNMQDLLCDSGMNPYPEPYQSMYQKRRLGALNMDWKPPSIKLAVGPDFSLDPEYQMLPLA 764

Query: 216 DLDVLVEPLPEFVDAMDWEPENEVQSEDSDSEYNVPEEYSTGGEQGSLNSSSSVDRECSA 275
           DLDVLVEPLPEFVD MDWEPENEVQS+D+DSEYNV EEYS+GGEQGSLNSSSSVD +CS+
Sbjct: 765 DLDVLVEPLPEFVDVMDWEPENEVQSDDNDSEYNVTEEYSSGGEQGSLNSSSSVDPDCSS 824

Query: 276 EDSEVEGRNGFHRSKRKKSKAEIEIMTSSGRRVKRRNLDECDGNTLRTNRTRKSRIGCKA 335
           E SE+EG++ FHRS RKK KAEIEIMTSSGRRVKRRNLDEC GNT R++RTRKS+IG K 
Sbjct: 825 EGSEIEGKDSFHRSTRKKQKAEIEIMTSSGRRVKRRNLDECVGNTFRSHRTRKSKIGRKT 884

Query: 336 SKRKSSTSKGFRPQRAAARNALTLFSKITGAATDGXXXXXXXXXXXXXXXXLQNSDIQSD 395
           SK KSS  K  RPQRAAARNAL+LFSKITG A+ G                 Q SDIQSD
Sbjct: 885 SKAKSSMLKALRPQRAAARNALSLFSKITGTASGGEDGDSSEIDSSESESMQQQSDIQSD 944

Query: 396 ESEKSLQNERNKHLKGKEVPLEDN 419
           ESE+SLQN +N+++KGKEV LE++
Sbjct: 945 ESERSLQNAQNRNMKGKEVSLEED 968


>30076.m004662 WD-repeat protein, putative
          Length = 1546

 Score =  413 bits (1061), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/404 (51%), Positives = 278/404 (68%), Gaps = 13/404 (3%)

Query: 781  LHEDITDGPHRTDITGSKATTDD--LMNCNIKLGQEHDSDDVCRNADNGSISSRCQLPSE 838
            + E+ ++   RT     KAT+ +   MN N++L    D  +  ++ D        QL  E
Sbjct: 1149 VEENASNAMRRTRSMKMKATSREPHYMNLNLRLKVNQDFIETSKDYD-------IQLLPE 1201

Query: 839  EWGSSSRMTVGLRSSRNRRTSYHFRDASPVDRRKANQSGKKVSWLMLSKHEEGSRYIPQQ 898
            E   +SRMTV  RS+RNR  +   R    +   K +   +K+SWL+LSKHE G RYIPQ 
Sbjct: 1202 ERMPNSRMTVRSRSARNRLGNNDTRYPISI---KPSHPIRKLSWLILSKHEGGYRYIPQL 1258

Query: 899  GDEVVYFRQGHQEYIDYIGSRETGPWKSVKGHIRAVEFCKLEALEYSTLPGSGDSCCKMT 958
            GDEVVY RQGH EYI+ + S E+GPW S + ++  VE C++E ++Y   PG GDSCCK+ 
Sbjct: 1259 GDEVVYLRQGHLEYIESVRSEESGPWSSSRRYVNPVETCRVERIKYGCGPG-GDSCCKIM 1317

Query: 959  LKFVDSTSDVCQKSFKLTLPEVTGFPDFLVERTRFDAAMRRNWTCRDKCRVYWKNDGEGD 1018
            L+F+D +S V  + F+LTL E+T FPDF+VE+  +DAA+ RNWT  DKC+V+W+N    D
Sbjct: 1318 LRFIDPSSGVFGEGFELTLLELTDFPDFVVEKAWYDAAINRNWTRGDKCQVWWRNANGED 1377

Query: 1019 GSWWEGRILSVKAKTSEFPDSPWERYTIQYRSDPRETHQHSPWELFDFDSQWEQPHIDDE 1078
            GSWW+GRI+S KAK+ E+PDSPWERY +QY +DP E + HSPWEL D D  WE PHID E
Sbjct: 1378 GSWWDGRIVSSKAKSEEYPDSPWERYRVQYETDPDEENLHSPWELHDPDMPWEHPHIDSE 1437

Query: 1079 IRNKLISAFAKLEQSGNTEQDRYGIQKLRQVSQKTNFTNRYPVPLSLEVIQSRLENYYYR 1138
            IR+KL+SAF KLE+S + ++D +GIQKL + SQK +F N+YPVP   E+I+SRLEN YYR
Sbjct: 1438 IRDKLLSAFDKLEESVSRKKDSHGIQKLNETSQKPDFFNKYPVPFYPEIIRSRLENNYYR 1497

Query: 1139 TLEAVKHDIEVMLTNSESYFIKNLELSGKMKRLSGWFKKTLSSL 1182
            TLEAVKHDI VM+ N++SYF  N ELS KM+RLS W+ + LS +
Sbjct: 1498 TLEAVKHDIHVMMENAQSYFAGNKELSHKMRRLSEWYSRKLSKI 1541



 Score =  338 bits (867), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 213/466 (45%), Positives = 278/466 (59%), Gaps = 43/466 (9%)

Query: 96   DGTSIILSDDVGQLYILNTGQGESQQDAKYDQFFLGDYRPLMQDTYGNIIDQETQLVPYR 155
            DGTSI+LSDDVGQ+++LNTGQGE Q+DAKYDQFFLGDYRPL++D+ GN++DQETQL PYR
Sbjct: 630  DGTSIVLSDDVGQIHLLNTGQGECQKDAKYDQFFLGDYRPLIRDSAGNVLDQETQLPPYR 689

Query: 156  RNMQDLLCDSGMNPYPEPYQSMYQKRRLGALNMEWKPPSIKLTVVPDFSLDPDFQMLPLA 215
            RN+QD LCDS M PYPEPYQ+M+QKRRLGAL++EW PPSIK  V PDFSL  D+QM PL 
Sbjct: 690  RNVQDPLCDSSMVPYPEPYQTMFQKRRLGALSIEWHPPSIKFAVGPDFSLGLDYQMPPLE 749

Query: 216  DLDVLVEPLPEFVDAMDWEPENEVQSEDSDSEYNVPEEYSTGGEQGSLNSSSSVDRECSA 275
            DLD ++E LPEF+DA+ WEPE EV S+D+DSEYNV EE ++  E GSL  SS+ D ECS 
Sbjct: 750  DLDRMIESLPEFIDAIHWEPEIEVISDDNDSEYNVTEECNS-EEHGSLCCSSASDPECST 808

Query: 276  EDSEVE--GRNGFHRSKRKKSKAEIEIMTSSGRRVK-RRNLDECDGNTLRTNRTRKSRIG 332
            EDS++E   ++G  RS+R+K K  +    SSG  +  +RNL+E D +T  +N  +K + G
Sbjct: 809  EDSDIEHSPKDGLPRSRRRKHKTNV----SSGSPISMKRNLNERDESTPGSNGAKKLKSG 864

Query: 333  CKASKRKSSTSKGFRPQRAAARNALTLFSKITGAATDGXXXXXXXXXXXXXXXXLQNSDI 392
             K SKRKSS +   RPQR AARNALT+FSK+TG +TDG                L+  DI
Sbjct: 865  RKVSKRKSSKATSSRPQRVAARNALTMFSKMTGTSTDGDDDDLEDDTSSSESGLLETEDI 924

Query: 393  QSDESEKSLQNERNKHLKGKEVPLEDNEDFVKSHEQSHLNAGNRGKLVLKLPVRNSNKFV 452
                                + P +D +        S  NAG + KL++KL + NS K V
Sbjct: 925  --------------------DKPPQDLD--------SQSNAGCKKKLIVKLSLCNSKKPV 956

Query: 453  VSETKTTNHQIDVGPSSCKAPT------EASNVNRVHIRSVDLERSSSYTNGTAVKAKER 506
              E    N    +G  +    T      +    +     +VD+ ++ S      V   E+
Sbjct: 957  SPEDSVVNVGRQIGHMTPSPETGISLSSKDLVSSSSDAFAVDVCQNRSRL-FRGVGHPEK 1015

Query: 507  GQTDSYMSEGYRNEDIKWGGVKARTSKRQRFGEAMSSAAYARFGLC 552
             +     S G     I+WG V   TSKR R  + +    +A    C
Sbjct: 1016 VEDGIEGSPGDNRSKIRWGEVNDCTSKRSRDFDLLEENEFASTSHC 1061