Jatropha Genome Database

JcCA0305711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0305711.10 + phase: 0 
         (243 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28152.m000908 zinc finger protein, putative                           246   1e-65
30170.m013751 zinc finger protein, putative                           171   4e-43
29661.m000908 zinc finger protein, putative                           124   3e-29
30078.m002253 nucleic acid binding protein, putative                   48   4e-06
30174.m008817 conserved hypothetical protein                           48   4e-06
50114.m000014 conserved hypothetical protein                           47   6e-06
30138.m004008 hypothetical protein                                     47   7e-06

>28152.m000908 zinc finger protein, putative
          Length = 252

 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 150/259 (57%), Positives = 163/259 (62%), Gaps = 23/259 (8%)

Query: 1   MALEALNSPTTATPFNYEDTWTKRKRSKRPRGESP-PTEEEYLALCLIMLARGGS----- 54
           MALEALNSPTTATPFNYEDTWTKRKRSKRPR ESP PTEEEYLALCLIMLARGG+     
Sbjct: 1   MALEALNSPTTATPFNYEDTWTKRKRSKRPRSESPAPTEEEYLALCLIMLARGGNSTSTS 60

Query: 55  ---TSPTAEEIASTSXXXXXXXALNLSYKCTVCNKAFPSYQALGGHKXXXXXXXXXXXXX 111
              ++ T+ + AS S       ALNLSYKCTVCNKAFPSYQALGGHK             
Sbjct: 61  TSTSTSTSAKSASPSPPPPQPPALNLSYKCTVCNKAFPSYQALGGHK------ASHKKSS 114

Query: 112 XXXXXXXXXXXXXXXXXXXXXXXXXXXHECSICHKTFPTGQALGGHKRRHYEGPVGGHNH 171
                                      HECSICHKTFPTGQALGGHKRRHYEGP GG+N+
Sbjct: 115 SETATIDNPSTSTTTASAVPTATSGRTHECSICHKTFPTGQALGGHKRRHYEGPGGGNNN 174

Query: 172 SSSAVTXXXXXXXXXXXXXXXX----FEFDLNLPALPELWPGN---REQEVESPLPGKKP 224
           ++S +T                    FE DLNLPALPE W  N   R+QEVESPLPGKKP
Sbjct: 175 TNSTITSSEGGASATQSQSQSQSRGGFEIDLNLPALPEFWSANNNGRDQEVESPLPGKKP 234

Query: 225 RLSLLLKQEKTEMKVPLQD 243
           RLS  LKQE  + K+ LQD
Sbjct: 235 RLS-FLKQEDIDTKISLQD 252


>30170.m013751 zinc finger protein, putative
          Length = 256

 Score =  171 bits (432), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/253 (45%), Positives = 127/253 (50%), Gaps = 31/253 (12%)

Query: 1   MALEALNSPTTATP-FNYEDT---------WTKRKRSKRPRGESPPTEEEYLALCLIMLA 50
           MALEALNSPTTATP F +ED+         WTKRKRSKR      PTEEEYLALCL+MLA
Sbjct: 1   MALEALNSPTTATPTFQFEDSSSLHCLAEPWTKRKRSKRSH-HHQPTEEEYLALCLVMLA 59

Query: 51  RGGSTSPTAEEIASTSXXXXXXXALNLS-----------YKCTVCNKAFPSYQALGGHKX 99
           RG +TS  A   ++TS                       YKCTVCNKAF SYQALGGHK 
Sbjct: 60  RG-TTSLAALSTSTTSHRHRSPTPSPPQLPSSSDDQKHRYKCTVCNKAFSSYQALGGHK- 117

Query: 100 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHECSICHKTFPTGQALGGHKR 159
                                                  HECSICHKTFP+GQALGGHKR
Sbjct: 118 ---ASHRKLAGGSGGEDQSTSTTTSTSTTTASATVSGRTHECSICHKTFPSGQALGGHKR 174

Query: 160 RHYEGPVGGHNHS-SSAVTXXXXXXXXXXXXXXXXFEFDLNLPALPELWPG---NREQEV 215
            HYEG VG    +  ++V                   FDLN+PALPE       + + EV
Sbjct: 175 CHYEGNVGAATATEKTSVVTSTISEGVGSTNTQSQRGFDLNIPALPEFAADFLISGDDEV 234

Query: 216 ESPLPGKKPRLSL 228
            SPLP KKPRL L
Sbjct: 235 MSPLPVKKPRLVL 247


>29661.m000908 zinc finger protein, putative
          Length = 206

 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/214 (38%), Positives = 105/214 (49%), Gaps = 24/214 (11%)

Query: 1   MALEALNSPTTATPFNYE------DTWTKRKRSKRPRGESPPTEEEYLALCLIMLARGGS 54
           MALEALNS +     N++      ++W KR+++KRPR E+ PTEEEYLALCL+MLA+   
Sbjct: 1   MALEALNSQSPLLHSNHDLDLHSAESWAKRRQTKRPRFENSPTEEEYLALCLLMLAK--D 58

Query: 55  TSPTAEEIASTSXXXXXXXALNLSYKCTVCNKAFPSYQALGGHKXXXXXXXXXXXXXXXX 114
           T+   +++             N  Y+C VC + F SYQALGGHK                
Sbjct: 59  TTTIQDDLDH-----------NRRYECKVCYRTFRSYQALGGHKASHHRKPIATDNNQSV 107

Query: 115 XXXXXXXXXXXXXXXXXXXXXXXXHECSICHKTFPTGQALGGHKRRHYEGPVGGHNHSSS 174
                                    ECSICH+TFP+GQALGGHKRRHY+G  GG    SS
Sbjct: 108 TTSSSIATSKTANSVSLSGKTR---ECSICHRTFPSGQALGGHKRRHYDGGSGGGVGGSS 164

Query: 175 AVTXXXXXXXXXXXXXXXXFE--FDLNLPALPEL 206
           +                   +  FDLNLPA+PE 
Sbjct: 165 SDGDNKGLKDVNSRNTTTISQRNFDLNLPAMPEF 198


>30078.m002253 nucleic acid binding protein, putative
          Length = 320

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 11/70 (15%)

Query: 38  EEEYLALCLIMLARGGSTSPTAEEIA---------STSXXXXXXXALNLSYKCTVCNKAF 88
           EEE +A CLI+LARG  T P   +++         + +         +  Y+C  CN+ F
Sbjct: 88  EEEDMANCLILLARG--TQPQTRKLSEPEAMATTRAATTKGMMCSGPSYVYQCKTCNRCF 145

Query: 89  PSYQALGGHK 98
           PS+QALGGH+
Sbjct: 146 PSFQALGGHR 155


>30174.m008817 conserved hypothetical protein
          Length = 480

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 18/24 (75%), Positives = 21/24 (87%)

Query: 139 HECSICHKTFPTGQALGGHKRRHY 162
           HECSICH+ F +GQALGGHKR H+
Sbjct: 298 HECSICHRVFSSGQALGGHKRCHW 321


>50114.m000014 conserved hypothetical protein
          Length = 230

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 18/24 (75%), Positives = 21/24 (87%)

Query: 139 HECSICHKTFPTGQALGGHKRRHY 162
           HECSICH+ F +GQALGGHKR H+
Sbjct: 84  HECSICHRVFSSGQALGGHKRCHW 107


>30138.m004008 hypothetical protein
          Length = 557

 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 139 HECSICHKTFPTGQALGGHKRRH-YEGPVGGHNHSSSAV 176
           HEC +C K FP+GQALGGHKR H   G   G N  S +V
Sbjct: 469 HECPVCFKVFPSGQALGGHKRSHLLAGTDQGKNDRSISV 507