Jatropha Genome Database

JcCA0305451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0305451.10 - phase: 0 /pseudo/partial
         (664 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29727.m000490 conserved hypothetical protein                          676   0.0  

>29727.m000490 conserved hypothetical protein
          Length = 1088

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/350 (89%), Positives = 333/350 (95%)

Query: 1   VRGSHVGTYLPNSGIWHHTQRLLKKGASNTNTVHHLDFDAPTREHAHQLPDDKKQDESLL 60
           VRGSHVGTYLPNSGIWHHTQR L+KGAS+TN VHHLDFDAPTREHAHQLPDDKKQDESLL
Sbjct: 269 VRGSHVGTYLPNSGIWHHTQRFLRKGASSTNIVHHLDFDAPTREHAHQLPDDKKQDESLL 328

Query: 61  EDVWTLLRAGRLEEACDLCRSAGQPWRAATLCPFGGLDLAPSIEALVKNGKNRTLQAIEL 120
           EDVW LLRAGRL+EACDLCRSAGQPWRAATLCPFGGLDL PS+EALVKNGKNRTLQAIEL
Sbjct: 329 EDVWILLRAGRLDEACDLCRSAGQPWRAATLCPFGGLDLTPSVEALVKNGKNRTLQAIEL 388

Query: 121 ESGIGQQWRLWKWASFCASEKIAEQNGGKYEVAVYASQCSDLKRMLPICTDWESACWAMA 180
           ES IG QWRLWKWAS+CASEKIAEQNGGKYEVAVYA+QCSDLKRML ICTDWESACWAMA
Sbjct: 389 ESVIGHQWRLWKWASYCASEKIAEQNGGKYEVAVYAAQCSDLKRMLQICTDWESACWAMA 448

Query: 181 KSWLDVQVDLELARSQPGRIEQLKSYGDDIDGSPGQIDSASHPSIGPEGWPLHVLNQQPR 240
           KSWLDVQVDLELA S+PGR++QLKSYGD  +GSPGQID A++ S+GPE WPL VLNQQPR
Sbjct: 449 KSWLDVQVDLELAHSEPGRMDQLKSYGDVSEGSPGQIDYAANNSLGPENWPLQVLNQQPR 508

Query: 241 DFSALLQKLHSGETINEAVARGCKEQQRQIEMDLMLGNIPHLLDMIWAWITPSEDDQNVF 300
           + SALLQKLHSGE +NEAV+RGCKEQQRQIEMDLMLGNIP LLD+IW+WI+PS+DDQNVF
Sbjct: 509 NLSALLQKLHSGEMVNEAVSRGCKEQQRQIEMDLMLGNIPDLLDLIWSWISPSDDDQNVF 568

Query: 301 RPHGDPQMIRFGAHLVLVLRYLLAEEMKDSFREKLMNVGDLILHMYVMFL 350
           RPHGDPQMIRFGAHLVLVLRYLLAEEMKDSFREKLMNVGDLILHMYVMFL
Sbjct: 569 RPHGDPQMIRFGAHLVLVLRYLLAEEMKDSFREKLMNVGDLILHMYVMFL 618



 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/245 (84%), Positives = 216/245 (88%), Gaps = 1/245 (0%)

Query: 420 STITNVKDVSVKLLLRALMHSNILFREFSLISMWRIPAMPIGAHTLLSLLAEPLKQLSEI 479
           STI NVKDVS KLLLRALMHSNILFREF+LISMWR+PAMPIGAH LL+LLAEPLKQLSE+
Sbjct: 730 STIENVKDVSFKLLLRALMHSNILFREFALISMWRVPAMPIGAHALLTLLAEPLKQLSEV 789

Query: 480 PDTLEDYFSENLKEFQDWSEYYSCDATYRNWLKIELENAEVPPFELSMXXXXXXXXXXXX 539
           PDTLEDY SENLKEFQDWSEYYSCDATYR+WLKIELENA VPP ELS+            
Sbjct: 790 PDTLEDYVSENLKEFQDWSEYYSCDATYRSWLKIELENA-VPPPELSLEEKQRSITAAQE 848

Query: 540 XLNSSLSLLLRKENPWLTPVEDQAYESAAPTFLELHATAMLCLPSGECMCPDATICTALM 599
            LNSSL LLLRKENPWL  VED AYESAAP FLELHATAMLC PSGECMCPDATICTALM
Sbjct: 849 TLNSSLLLLLRKENPWLASVEDHAYESAAPLFLELHATAMLCHPSGECMCPDATICTALM 908

Query: 600 SALYSSVSEEIVLHRQLMVNVALSPRDNYCIEVVLRCLAVDGDGLGSHQANDGGILGTVM 659
           SALYSSVSEE VLHRQLMVNVA+S RDNYCIEVVLRCLAV+GDGLG HQANDGGIL TVM
Sbjct: 909 SALYSSVSEETVLHRQLMVNVAISSRDNYCIEVVLRCLAVEGDGLGCHQANDGGILATVM 968

Query: 660 AAGFK 664
           AAGFK
Sbjct: 969 AAGFK 973