Jatropha Genome Database

JcCA0305301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0305301.10 + phase: 0 
         (282 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28565.m000330 undecaprenyl diphosphate synthase, putative             253   1e-67
28565.m000331 undecaprenyl diphosphate synthase, putative             244   4e-65
28565.m000328 undecaprenyl diphosphate synthase, putative             237   5e-63
29830.m001441 undecaprenyl diphosphate synthase, putative             228   2e-60
29681.m001337 undecaprenyl pyrophosphate synthetase, putative         132   2e-31
34670.m000028 undecaprenyl pyrophosphate synthetase, putative          76   2e-14

>28565.m000330 undecaprenyl diphosphate synthase, putative
          Length = 370

 Score =  253 bits (645), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/175 (69%), Positives = 142/175 (81%)

Query: 6   KPLGFLASSLRNCLFSVLSVGPIPCHLAFIMDGNRRFAKKQKQGVVTGYRAGFTALMSII 65
           K  G LAS +R  +F VL  GPIP HL+ IMDGNRRF KK+      GYRAGF+ALMS++
Sbjct: 11  KLFGHLASFMRRSIFRVLCNGPIPSHLSVIMDGNRRFTKKENLKPGAGYRAGFSALMSML 70

Query: 66  KYCSELGVKYVTIYAFSIDNFRREPEEVKIIMDLMLEKTEGILKEESVVHQYGVRVYFLG 125
           KYC ELGVKYVTI+AF IDNF+R  +EV++IMDLMLEKT G+LKEES+VHQYGVRVYF+G
Sbjct: 71  KYCYELGVKYVTIFAFGIDNFKRRSDEVQVIMDLMLEKTLGMLKEESIVHQYGVRVYFIG 130

Query: 126 NLKLLCEPLRVAAEKVMKATASNTKLLLFICVAYTSLDEIIHAVHESCNDKLKNI 180
           NLKLL EPLRVAAEKVM+ T++NTK +L ICVAY+S DEI HAV ESC +K K I
Sbjct: 131 NLKLLDEPLRVAAEKVMRTTSNNTKFVLLICVAYSSTDEIAHAVQESCQEKWKEI 185



 Score =  130 bits (326), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 67/78 (85%)

Query: 204 IKLVDIEKHMYMALGPEPDVLIRTSGESRLSNFLLWQTSHCTLYSPDALWPEIGLWNLVW 263
           IK VD++KHMYMA+ P+PD+LIRT+GE+RLSNFLLWQ   C LYSPD LWPE GL +LVW
Sbjct: 292 IKQVDLQKHMYMAVAPDPDILIRTAGETRLSNFLLWQAGDCPLYSPDVLWPEFGLRHLVW 351

Query: 264 AVLNFQRNHSYLEKKKKQ 281
           AVLNFQR+ +Y EKKKKQ
Sbjct: 352 AVLNFQRSCAYSEKKKKQ 369


>28565.m000331 undecaprenyl diphosphate synthase, putative
          Length = 363

 Score =  244 bits (622), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 115/173 (66%), Positives = 140/173 (80%)

Query: 8   LGFLASSLRNCLFSVLSVGPIPCHLAFIMDGNRRFAKKQKQGVVTGYRAGFTALMSIIKY 67
           LG LAS +R  +F VL +GPIP HL+FIMDGNRRF KK+      GYRAGF ALMS++KY
Sbjct: 5   LGRLASFMRQSIFHVLRMGPIPSHLSFIMDGNRRFTKKENLKPGAGYRAGFLALMSMLKY 64

Query: 68  CSELGVKYVTIYAFSIDNFRREPEEVKIIMDLMLEKTEGILKEESVVHQYGVRVYFLGNL 127
           C ELGVK+VTI+AF IDNF+R P+EV+ IMDL+LEKT G+LKEES+VHQYG+RV+F+GNL
Sbjct: 65  CYELGVKHVTIFAFGIDNFKRRPDEVRFIMDLILEKTLGLLKEESIVHQYGIRVHFIGNL 124

Query: 128 KLLCEPLRVAAEKVMKATASNTKLLLFICVAYTSLDEIIHAVHESCNDKLKNI 180
           KLL EPLRVAAEKV + T+SNTK +L ICVAY+S +EI HAV + C +K   I
Sbjct: 125 KLLDEPLRVAAEKVTRTTSSNTKFVLLICVAYSSTNEITHAVQQYCKEKWNEI 177



 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 66/78 (84%)

Query: 204 IKLVDIEKHMYMALGPEPDVLIRTSGESRLSNFLLWQTSHCTLYSPDALWPEIGLWNLVW 263
           IK VD+EKHM MA+ P+PD+LIRTSGE+RLSNFLLWQ   C  YSPDALWP+I L  LVW
Sbjct: 285 IKQVDLEKHMPMAVAPDPDILIRTSGETRLSNFLLWQAGDCQGYSPDALWPDIVLRQLVW 344

Query: 264 AVLNFQRNHSYLEKKKKQ 281
           AVLNFQ N++YLEKKKKQ
Sbjct: 345 AVLNFQYNYAYLEKKKKQ 362


>28565.m000328 undecaprenyl diphosphate synthase, putative
          Length = 331

 Score =  237 bits (604), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 111/169 (65%), Positives = 139/169 (82%)

Query: 12  ASSLRNCLFSVLSVGPIPCHLAFIMDGNRRFAKKQKQGVVTGYRAGFTALMSIIKYCSEL 71
            S +  C+F VLS+GPIP HL+F+MDGNRRFAKK+      G++AG +AL++I+KYC +L
Sbjct: 9   GSLITRCIFGVLSMGPIPGHLSFLMDGNRRFAKKENLETGAGHKAGSSALITILKYCYDL 68

Query: 72  GVKYVTIYAFSIDNFRREPEEVKIIMDLMLEKTEGILKEESVVHQYGVRVYFLGNLKLLC 131
            VKYVT+YAFSI+NF R P EV+ +MDLMLE TEG+LKEESVVHQ+G+RV+F+GNLKLL 
Sbjct: 69  RVKYVTVYAFSIENFNRPPHEVQTVMDLMLETTEGLLKEESVVHQHGIRVHFIGNLKLLD 128

Query: 132 EPLRVAAEKVMKATASNTKLLLFICVAYTSLDEIIHAVHESCNDKLKNI 180
           +PLRVAAEKVM+AT+ NTK +L ICVAY+S DEIIHAV ESC +K   I
Sbjct: 129 KPLRVAAEKVMRATSKNTKYVLLICVAYSSSDEIIHAVQESCKEKWNKI 177



 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/78 (76%), Positives = 69/78 (88%)

Query: 204 IKLVDIEKHMYMALGPEPDVLIRTSGESRLSNFLLWQTSHCTLYSPDALWPEIGLWNLVW 263
           IK VD+EK MYMA+ P+PD+LIRTSGE+RLSNFLLWQ S+C LYSPD LWPE GL +LVW
Sbjct: 253 IKQVDVEKPMYMAVAPDPDILIRTSGETRLSNFLLWQASNCPLYSPDVLWPEFGLRHLVW 312

Query: 264 AVLNFQRNHSYLEKKKKQ 281
           AVLNFQR+H+YLEKKK Q
Sbjct: 313 AVLNFQRSHAYLEKKKNQ 330


>29830.m001441 undecaprenyl diphosphate synthase, putative
          Length = 381

 Score =  228 bits (582), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/166 (68%), Positives = 140/166 (84%)

Query: 11  LASSLRNCLFSVLSVGPIPCHLAFIMDGNRRFAKKQKQGVVTGYRAGFTALMSIIKYCSE 70
           L S +R C+F +LSVGPIP H+AFIMDGNRR+AKK+      G+RAGF+AL+SI+KYC E
Sbjct: 16  LVSFMRICMFRILSVGPIPNHIAFIMDGNRRYAKKENMKEGAGHRAGFSALISILKYCYE 75

Query: 71  LGVKYVTIYAFSIDNFRREPEEVKIIMDLMLEKTEGILKEESVVHQYGVRVYFLGNLKLL 130
           LGVKYVT+YAFSIDNF+R P+EV+ +MDLMLEK E +LKEES+V+QYG+RVYF+GNL LL
Sbjct: 76  LGVKYVTVYAFSIDNFKRRPDEVQDLMDLMLEKIEELLKEESIVNQYGIRVYFIGNLTLL 135

Query: 131 CEPLRVAAEKVMKATASNTKLLLFICVAYTSLDEIIHAVHESCNDK 176
            EP+R+AAEKVM+ATA+NTK    IC+AYTS DEI+HAV ESC  K
Sbjct: 136 NEPVRIAAEKVMRATANNTKCTFLICIAYTSCDEIVHAVQESCKFK 181



 Score =  120 bits (302), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 51/67 (76%), Positives = 60/67 (89%)

Query: 204 IKLVDIEKHMYMALGPEPDVLIRTSGESRLSNFLLWQTSHCTLYSPDALWPEIGLWNLVW 263
           IKLVDIE++MYMA+ PEPD+LIR+SGE+RLSNFLLWQ S C LYSPDALWPEIG  +LVW
Sbjct: 279 IKLVDIERNMYMAVAPEPDILIRSSGETRLSNFLLWQASDCMLYSPDALWPEIGFQHLVW 338

Query: 264 AVLNFQR 270
            V+NFQ+
Sbjct: 339 VVINFQQ 345


>29681.m001337 undecaprenyl pyrophosphate synthetase, putative
          Length = 310

 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 125/242 (51%), Gaps = 21/242 (8%)

Query: 28  IPCHLAFIMDGNRRFAKKQKQGVVTGYRAGFTALMSIIKYCSELGVKYVTIYAFSIDNFR 87
           +P H+A IMDGN R+AK+Q      G+ AG  +LM I+  C   G+K +T++AFS +N+ 
Sbjct: 78  MPRHVAVIMDGNGRWAKQQGWPPSKGHEAGVRSLMEIMNLCGHWGIKVLTVFAFSCENWT 137

Query: 88  REPEEVKIIMDLMLEKTEGILKEE-SVVHQYGVRVYFLGNLKLLCEPLRVAAEKVMKATA 146
           R   E+  +M L     E +LK E   + + G+RV  +G++  L E L+    +V   T 
Sbjct: 138 RPKVEIDFLMSLF----ERVLKSELENLLREGIRVSIIGDVSKLPESLQRLIREVEDTTK 193

Query: 147 SNTKLLLFICVAYTSLDEIIHAVHESCNDKLKNIILPDKPHTDXXXXXXXXXXXKDGIKL 206
             +KL L + V+Y+   +++ A         +  I P+    D                L
Sbjct: 194 DYSKLHLLVAVSYSGKYDVVKACRNIAGRVKEGAIEPEDISED----------------L 237

Query: 207 VDIEKHMYMALGPEPDVLIRTSGESRLSNFLLWQTSHCTLYSPDALWPEIGLWNLVWAVL 266
           ++ E     +  P PD+LIRTSGE R+SNFLLWQ ++  LY  + LWP+ G    V A+ 
Sbjct: 238 IEQELETNCSEHPSPDLLIRTSGELRISNFLLWQLAYTELYFAEELWPDFGKDGFVEALT 297

Query: 267 NF 268
           +F
Sbjct: 298 SF 299


>34670.m000028 undecaprenyl pyrophosphate synthetase, putative
          Length = 165

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 30/168 (17%)

Query: 107 ILKEESVVHQYGVRVYFLGNLKLLCEPLRVAAEKVMKATASNTKLLLFICVAYTSLDEII 166
           I ++ + +H+  VRV  +G+   L + +R   E+  + T  NT L L I   Y + DEI 
Sbjct: 3   IRRDLAELHKENVRVRVIGDRVGLKDDIRALLEEAEQTTRDNTALTLIIAFNYGARDEIA 62

Query: 167 HAVHESCNDKLK-----NIILPDKPHTDXXXXXXXXXXXKDGIKLVDIEKHMYMALGPEP 221
            A      D  +     + I PD                        I   +  A  P+P
Sbjct: 63  RAAASLARDVAEGRLDASAITPDA-----------------------ISARLDTAGIPDP 99

Query: 222 DVLIRTSGESRLSNFLLWQTSHCT-LYSPDALWPEIGLWNLVWAVLNF 268
           D++IRTSGE RLSNFLLWQ ++   L+ PD  WP+     LV A+  +
Sbjct: 100 DLIIRTSGEERLSNFLLWQAAYSEFLFIPD-YWPDFNRQTLVAAIDQY 146