Jatropha Genome Database

JcCA0304841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304841.10 + phase: 0 
         (407 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29801.m003203 conserved hypothetical protein                          452   e-127
30170.m013901 hypothetical protein                                    286   9e-78

>29801.m003203 conserved hypothetical protein
          Length = 401

 Score =  452 bits (1162), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/389 (54%), Positives = 285/389 (73%), Gaps = 7/389 (1%)

Query: 19  GIAVLFAWMSSEERHLKNYVELYSSLGWNSLVCHSQFLNMFFPDKAEALAFDILNRIVEE 78
           GIAV+F W+S+ E  LK+YV+LY SLGWNSLV H+ FL  F+PD+A ++ + +LN++V+E
Sbjct: 20  GIAVIFGWISTPENELKSYVDLYFSLGWNSLVSHADFLTAFYPDRALSMGYVLLNQLVQE 79

Query: 79  LKTRPCPLVFMSFSGGPKACMYKVLQIIEGKCKLQLNLDDRRLVRDCISGHIYDSSPVDF 138
           L+ RPCP+VF++ SGG KACMYKV QII+  C+  +NLD+ RL+R+C+SGHIYDSSPVDF
Sbjct: 80  LRIRPCPVVFVALSGGSKACMYKVFQIIQRTCEGHINLDESRLLRNCVSGHIYDSSPVDF 139

Query: 139 TSVLGREFIVHPSVLKMSRPPKVLSWMVNSISDCLDALFLNKFESQRAEYWQTLYSSVSM 198
           T+ LG +F +HP++ KM RP K++SW    I   LD L+L +FESQR EYWQTLYSSV  
Sbjct: 140 TTDLGLQFALHPAIQKMPRPSKLVSWFAKGIVSGLDGLYLTRFESQRVEYWQTLYSSVEF 199

Query: 199 GAPYLIVCSESDDLASYQVICNFSQRLQELGADVKLVTMSGSPHVGHFRLYPFDYKAAVT 258
           GAPYLI+CSES+ LA Y+ IC F+QRL +LG DVKLV  + S H+G+++  P  Y+AAVT
Sbjct: 200 GAPYLILCSESNHLAPYKSICKFAQRLDDLGGDVKLVKWNVSLHMGYYKHCPIQYRAAVT 259

Query: 259 ELLGKAAAVYSQRIRRLEGERLGVEGTHDEISEPIGDLRKAVESPNQSFCGVTIQPSDNF 318
            LL KAA+V++QRI++L       +G HDEISE I +L+ A +  N+S   V + P D+F
Sbjct: 260 NLLEKAASVFAQRIQQL-------DGIHDEISELICNLQNAADDSNESLRRVALGPGDHF 312

Query: 319 FMPSSVGYYEGRDMGSLQDEHKEDLIHLHNPPRINAHGVLGQVLFDVCVPKTVEDWDIKS 378
           F+P+S   +  R    LQDE K+  +++   P INA+ +LGQ+LFDVCVPK VE WDI+ 
Sbjct: 313 FVPTSAENHNNRQSEPLQDEKKQVSVYVPTSPSINANSILGQMLFDVCVPKNVEGWDIRF 372

Query: 379 SASLSRQPYSSTRRHAPFNPIKCILRSRL 407
           S SL+ QP  S  RH+P N +KCI RSRL
Sbjct: 373 SGSLNGQPIGSAHRHSPLNGVKCIRRSRL 401


>30170.m013901 hypothetical protein
          Length = 231

 Score =  286 bits (733), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 135/164 (82%), Positives = 146/164 (89%)

Query: 244 GHFRLYPFDYKAAVTELLGKAAAVYSQRIRRLEGERLGVEGTHDEISEPIGDLRKAVESP 303
           GHFR YP DYKAAVTELLGKA+ VYSQRIRRLEGE + VEG HDEISEP+ DLRKA  SP
Sbjct: 68  GHFRQYPVDYKAAVTELLGKASTVYSQRIRRLEGEGMSVEGGHDEISEPMSDLRKAAASP 127

Query: 304 NQSFCGVTIQPSDNFFMPSSVGYYEGRDMGSLQDEHKEDLIHLHNPPRINAHGVLGQVLF 363
           +QSF GVTIQPSD+F+MPSSVGYYEGRD GSLQDE KE LIHL +PP+INAHGVLGQ+LF
Sbjct: 128 SQSFRGVTIQPSDHFYMPSSVGYYEGRDGGSLQDEQKEGLIHLPSPPKINAHGVLGQILF 187

Query: 364 DVCVPKTVEDWDIKSSASLSRQPYSSTRRHAPFNPIKCILRSRL 407
           DVCVPK VEDWDI+SS SLSRQPY+S RRHAPFNPIKCI RSRL
Sbjct: 188 DVCVPKNVEDWDIRSSTSLSRQPYTSMRRHAPFNPIKCIRRSRL 231



 Score =  124 bits (311), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 57/68 (83%), Positives = 61/68 (89%)

Query: 27 MSSEERHLKNYVELYSSLGWNSLVCHSQFLNMFFPDKAEALAFDILNRIVEELKTRPCPL 86
          MSS+ERH+K YVELYSSLGWNSLVCHSQFLNMFF +KAE LA DILN I+EELK RPCPL
Sbjct: 1  MSSQERHVKPYVELYSSLGWNSLVCHSQFLNMFFSEKAETLALDILNEIIEELKMRPCPL 60

Query: 87 VFMSFSGG 94
          VF SFSGG
Sbjct: 61 VFASFSGG 68