Jatropha Genome Database

JcCA0304521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304521.10 - phase: 0 /partial/short
         (44 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29667.m000353 conserved hypothetical protein                           75   6e-15

>29667.m000353 conserved hypothetical protein
          Length = 196

 Score = 75.1 bits (183), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/44 (88%), Positives = 42/44 (95%)

Query: 1   MEVRLSDEKDLPQQDKQQINRDLKLFLKPVREKLLQFEQELKDR 44
           MEVRLSDEKDL Q+DK QIN+DLKLFL+PVREKLLQFEQELKDR
Sbjct: 153 MEVRLSDEKDLLQEDKLQINQDLKLFLQPVREKLLQFEQELKDR 196