Jatropha Genome Database

JcCA0304441.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304441.20 - phase: 0 
         (319 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30143.m001222 Rop guanine nucleotide exchange factor, putative        412   e-115
28934.m000056 Rop guanine nucleotide exchange factor, putative        402   e-112
29683.m000479 Rop guanine nucleotide exchange factor, putative        313   5e-86
30174.m008604 Rop guanine nucleotide exchange factor, putative        298   3e-81
30170.m014310 Rop guanine nucleotide exchange factor, putative        276   1e-74
30146.m003571 conserved hypothetical protein                          248   4e-66
29912.m005503 conserved hypothetical protein                          224   4e-59
29827.m002639 Rop guanine nucleotide exchange factor, putative        223   1e-58

>30143.m001222 Rop guanine nucleotide exchange factor, putative
          Length = 590

 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/263 (76%), Positives = 218/263 (82%), Gaps = 27/263 (10%)

Query: 56  SPSPLGWPIRKAGECK-SLLASSDSEDQEKSHSEDSKFKKLTSSKISEIDMMKARFAKLL 114
           S SPLGWPIRKAGECK SLL S+ +E+++ +H +DSKFK+L S+KISEIDMMK RFAKLL
Sbjct: 69  SQSPLGWPIRKAGECKKSLLGSTGNENKDSTHLDDSKFKQL-STKISEIDMMKERFAKLL 127

Query: 115 LGEDMSGSGKGACTAMAISNAITNLCVTIFGQLWRLEPLAPEKKSMWRREMEWLLCVGDH 174
           LGEDMSGSGKG CTA+AISNAITNLCVT+FGQLWRLEPL  EKKSMWRREMEWLLCVGDH
Sbjct: 128 LGEDMSGSGKGVCTALAISNAITNLCVTVFGQLWRLEPLPSEKKSMWRREMEWLLCVGDH 187

Query: 175 IVELIPSWQTFPDGSKLEVMTCRPRSDLFINLPALRKLDNMLLEILDSFVNAEFWYVDQG 234
           IVELIPSWQTFPDGSKLE                         EILDSF + EFWYVDQG
Sbjct: 188 IVELIPSWQTFPDGSKLE-------------------------EILDSFADTEFWYVDQG 222

Query: 235 IVAPDADGSASFRKTIQRQEEKWWLPVPRIPAGGLSDNSRKQLNHTRECTNQILKAAMAI 294
           IVAPDADGS SFRK IQRQEEKWWLPVPR+PAGGLSD SRKQLNHTRECTNQILKAAMAI
Sbjct: 223 IVAPDADGSTSFRKAIQRQEEKWWLPVPRLPAGGLSDKSRKQLNHTRECTNQILKAAMAI 282

Query: 295 NSIALAEMEVPDSYMEALPKQKK 317
           NSIALAEM+VP SY+E LPK  +
Sbjct: 283 NSIALAEMDVPYSYLETLPKNGR 305


>28934.m000056 Rop guanine nucleotide exchange factor, putative
          Length = 673

 Score =  402 bits (1033), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/259 (73%), Positives = 218/259 (84%), Gaps = 3/259 (1%)

Query: 61  GWPIRKAGECKSLLASSDS--EDQEKSHSEDSKFKKLTSSKISEIDMMKARFAKLLLGED 118
           GWP+ K  E     AS++   +D +K H  D K +K  SS ISEI+MMK RF+KLLLGED
Sbjct: 171 GWPLNKDEEEVHDCASTNGVCDDGKKLHLVDRKLEKQASS-ISEIEMMKERFSKLLLGED 229

Query: 119 MSGSGKGACTAMAISNAITNLCVTIFGQLWRLEPLAPEKKSMWRREMEWLLCVGDHIVEL 178
           MSG G G CTA+AISNAITNLC T+FGQLWRLEPL PEKK+MWRREMEW LCV DHIVEL
Sbjct: 230 MSGCGNGVCTALAISNAITNLCATLFGQLWRLEPLPPEKKAMWRREMEWFLCVSDHIVEL 289

Query: 179 IPSWQTFPDGSKLEVMTCRPRSDLFINLPALRKLDNMLLEILDSFVNAEFWYVDQGIVAP 238
           IPSWQTFPDGSKLEVMTCRPRSDL++NLPALRKLDNMLLEILDSF N EFWYVDQGI+A 
Sbjct: 290 IPSWQTFPDGSKLEVMTCRPRSDLYVNLPALRKLDNMLLEILDSFDNTEFWYVDQGILAS 349

Query: 239 DADGSASFRKTIQRQEEKWWLPVPRIPAGGLSDNSRKQLNHTRECTNQILKAAMAINSIA 298
           +ADGS+SFR+ +QRQEEKWWLPVPR+P  GL +NSRK+L H R+CTNQ+LKAAMAINSI 
Sbjct: 350 EADGSSSFRRALQRQEEKWWLPVPRVPPCGLHENSRKELQHKRDCTNQMLKAAMAINSIT 409

Query: 299 LAEMEVPDSYMEALPKQKK 317
           LA+MEVP++Y+E LPK  K
Sbjct: 410 LADMEVPETYLEGLPKNGK 428


>29683.m000479 Rop guanine nucleotide exchange factor, putative
          Length = 580

 Score =  313 bits (803), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 147/227 (64%), Positives = 179/227 (78%), Gaps = 8/227 (3%)

Query: 98  SKISEIDMMKARFAKLLLGEDMSGSGKGACTAMAISNAITNLCVTIFGQLWRLEPLAPEK 157
           + +SE++MMK RFAKLLLGEDMSG GKG CTA+AISNAITNL  T+FG+LWRLEPLAP+K
Sbjct: 96  TDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQK 155

Query: 158 KSMWRREMEWLLCVGDHIVELIPSWQTFPDGSKLEVMTCRPRSDLFINLPALRKLDNMLL 217
           KSMWRREMEWLLCV D IVEL+PS Q FP G   E+M  +PRSDL++NLPAL+KLD ML+
Sbjct: 156 KSMWRREMEWLLCVSDSIVELVPSVQQFPGGGTYEIMAAQPRSDLYVNLPALKKLDAMLI 215

Query: 218 EILDSFVNAEFWYVDQGIVAPDA-------DGSASFRKTIQRQEEKWWLPVPRIPAGGLS 270
            +LD F   EFWYVD+GI+  D         G ++ R +I RQEEKWWLP P++P+ GLS
Sbjct: 216 SMLDGFCETEFWYVDRGIILADGADNDVYPSGFSTGRPSI-RQEEKWWLPCPKLPSNGLS 274

Query: 271 DNSRKQLNHTRECTNQILKAAMAINSIALAEMEVPDSYMEALPKQKK 317
           +++RK+L   R+CTNQILKAAMAINS  LAEME+P +Y+E LPK  K
Sbjct: 275 EDARKRLQQCRDCTNQILKAAMAINSSVLAEMEIPTAYLETLPKCGK 321


>30174.m008604 Rop guanine nucleotide exchange factor, putative
          Length = 471

 Score =  298 bits (762), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 151/269 (56%), Positives = 190/269 (70%), Gaps = 9/269 (3%)

Query: 51  TVGCESPSPLGWPIRKAGECKSLLASSDSEDQEKSHSEDSKFKKLTSSKISEIDMMKARF 110
           +  CE PSP  WP  K+      +       Q     +D +      +  SE++MMK RF
Sbjct: 58  SYSCE-PSPSHWPANKSATRNQPVLGRLGMKQRMHIVDDQE------TVDSELEMMKERF 110

Query: 111 AKLLLGEDMSGSGKGACTAMAISNAITNLCVTIFGQLWRLEPLAPEKKSMWRREMEWLLC 170
           +KLLLGEDMSGSGKG CTA+ ISNAITNL  T+FGQ  RLEPL PEKK+MW+REM+ LL 
Sbjct: 111 SKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQTLRLEPLQPEKKAMWKREMDCLLS 170

Query: 171 VGDHIVELIPS-WQTFPDGSKLEVMTCRPRSDLFINLPALRKLDNMLLEILDSFVNAEFW 229
           V D+I+E  P+  Q   DG+ LEVM  RPRSD++INLPALRKLD +L+EILDSF + EFW
Sbjct: 171 VCDYILEFFPAKSQNLKDGTALEVMESRPRSDIYINLPALRKLDALLIEILDSFQDNEFW 230

Query: 230 YVDQGIVAPDADGSASFRKTI-QRQEEKWWLPVPRIPAGGLSDNSRKQLNHTRECTNQIL 288
           Y +QG ++ ++  S SFR+ I QR+EEKWW+PVP +P GG+S+ SRK L H R+C NQI 
Sbjct: 231 YAEQGSMSSNSTRSGSFRRVIVQRKEEKWWVPVPCVPPGGISEKSRKHLRHKRDCANQIH 290

Query: 289 KAAMAINSIALAEMEVPDSYMEALPKQKK 317
           KAAMAINS  LAEM++PD+YM +LPK  K
Sbjct: 291 KAAMAINSSILAEMDIPDTYMASLPKSGK 319


>30170.m014310 Rop guanine nucleotide exchange factor, putative
          Length = 523

 Score =  276 bits (705), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 127/214 (59%), Positives = 161/214 (75%), Gaps = 6/214 (2%)

Query: 100 ISEIDMMKARFAKLLLGEDMSGSGKGACTAMAISNAITNLCVTIFGQLWRLEPLAPEKKS 159
           +S+++MMK RFAKLLLGEDMSG GKG CTA+AISNAITNL  ++FG+L +LEPLAP+KKS
Sbjct: 84  LSDVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSASVFGELRKLEPLAPQKKS 143

Query: 160 MWRREMEWLLCVGDHIVELIPSWQTFPDGSKLEVMTCRPRSDLFINLPALRKLDNMLLEI 219
           MW REM+ LLCV D IVEL+PS Q  P G   EVM  RPR DLF+NLPAL+KL+ MLL I
Sbjct: 144 MWHREMDLLLCVSDSIVELVPSMQNLPGGGTFEVMVPRPRLDLFMNLPALKKLETMLLSI 203

Query: 220 LDSFVNAEFWYVDQGIVAPDADGSASF------RKTIQRQEEKWWLPVPRIPAGGLSDNS 273
           LD F +AEF+YVD+G++    + + +F       +    +EEKWWLP P++P  GLS+++
Sbjct: 204 LDGFCDAEFYYVDRGVIVAGGNETETFSLSSSSARPSISREEKWWLPFPKVPQNGLSEDA 263

Query: 274 RKQLNHTRECTNQILKAAMAINSIALAEMEVPDS 307
           RK+L   +ECTNQILK AMAIN   L EME+P +
Sbjct: 264 RKRLQQCKECTNQILKVAMAINGSVLTEMEIPSA 297


>30146.m003571 conserved hypothetical protein
          Length = 554

 Score =  248 bits (632), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 114/216 (52%), Positives = 165/216 (76%), Gaps = 10/216 (4%)

Query: 101 SEIDMMKARFAKLLLGEDMSGSGKGACTAMAISNAITNLCVTIFGQLWRLEPLAPEKKSM 160
           ++++ MK RFAKLLLGEDMSG GKG  +A+A+SNA TNL  ++FG+  RLEP+  E+K+ 
Sbjct: 104 TDMEQMKERFAKLLLGEDMSGGGKGVSSALALSNATTNLAASVFGEQQRLEPMPAERKAR 163

Query: 161 WRREMEWLLCVGDHIVELIPSWQTFPDGSKLEVMTCRPRSDLFINLPALRKLDNMLLEIL 220
           WR+E++WLL V D+IVEL+PS Q   DG+ +E+M  R R+DL +N+PALRKLD ML++ L
Sbjct: 164 WRKEIDWLLSVSDYIVELVPSQQKNKDGTNMEIMVTRQRTDLHMNIPALRKLDAMLIDCL 223

Query: 221 DSFVNA-EFWYVDQGIVAPDAD-GSASFRKTIQRQEEKWWLPVPRIPAGGLSDNSRKQLN 278
           D+F +  EF+Y+ +   APD++ GSA      +R+++KWWLP  ++P  GLS+ SRK L 
Sbjct: 224 DNFKDQNEFYYISKD--APDSEKGSA------KRKDDKWWLPTAKVPPNGLSEASRKFLQ 275

Query: 279 HTRECTNQILKAAMAINSIALAEMEVPDSYMEALPK 314
           + ++C NQ+LKAAMAIN+  L+EME+P++Y+E+LPK
Sbjct: 276 YQKDCVNQVLKAAMAINAQVLSEMEIPENYIESLPK 311


>29912.m005503 conserved hypothetical protein
          Length = 296

 Score =  224 bits (571), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/205 (52%), Positives = 149/205 (72%), Gaps = 9/205 (4%)

Query: 101 SEIDMMKARFAKLLLGEDMSGSGKGACTAMAISNAITNLCVTIFGQLWRLEPLAPEKKSM 160
           S+IDMMK +FAKLLLGEDMSG GKG  +A+A+SNAITNL  ++FG+  RLEP++PE K  
Sbjct: 96  SDIDMMKEKFAKLLLGEDMSGGGKGVSSALALSNAITNLAASVFGEQKRLEPMSPETKIR 155

Query: 161 WRREMEWLLCVGDHIVELIPSWQTFPDGSKLEVMTCRPRSDLFINLPALRKLDNMLLEIL 220
           WR+E++WLL V DHIVE +PS Q+  +G  +E+MT R RSDL +N+PALRKLD +L++ L
Sbjct: 156 WRKEIDWLLSVTDHIVEFVPSQQS-NNGINMEIMTTRQRSDLLMNIPALRKLDTILIDQL 214

Query: 221 DSFVNA-EFWYVDQGIVAPDADGSASFRKTIQRQEEKWWLPVPRIPAGGLSDNSRKQLNH 279
           D F N  EFWYV +       D   S ++T  R ++KWW+P  ++P  GLS+ +R+ +  
Sbjct: 215 DQFGNQNEFWYVSK-------DSDESEQETPPRNDDKWWIPTVKVPPEGLSEVTRRWIQF 267

Query: 280 TRECTNQILKAAMAINSIALAEMEV 304
            ++  NQ+LKAAMAIN+  L+EME+
Sbjct: 268 QKDSVNQVLKAAMAINAQVLSEMEI 292


>29827.m002639 Rop guanine nucleotide exchange factor, putative
          Length = 526

 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/227 (47%), Positives = 152/227 (66%), Gaps = 7/227 (3%)

Query: 91  KFKKLTSSKISEIDMMKARFAKLLLGEDMSGSGKGACTAMAISNAITNLCVTIFGQLWRL 150
           K K   + + S+++ MK +FAKLLLGED++G  KG  TA+A+SNAI NL  ++FG+LW+L
Sbjct: 81  KAKPAYAVQYSDVETMKEKFAKLLLGEDITGGCKGLTTALALSNAIANLAASVFGELWKL 140

Query: 151 EPLAPEKKSMWRREMEWLLCVGDHIVELIPSWQTFPDGSKLEVMTCRPRSDLFINLPALR 210
           EPL  E K  WR+E++WLL   +++VEL+P+ Q   +G  LE+MT + R+D+ +NLPAL+
Sbjct: 141 EPLPEENKKKWRKELDWLLSPTNYMVELVPTKQNGANGRTLEIMTPKARADIHVNLPALQ 200

Query: 211 KLDNMLLEILDSFVNAEFWYVDQGIVAPDADGSASFRKTIQRQEEKWWLPVPRIPAGGLS 270
           KLD+ML+E LDS VN EFWY + G         A  R    +Q ++WWLP+P++P  GLS
Sbjct: 201 KLDSMLIETLDSMVNNEFWYSEVG-------SRAEGRSKSTKQSKRWWLPLPQVPTTGLS 253

Query: 271 DNSRKQLNHTRECTNQILKAAMAINSIALAEMEVPDSYMEALPKQKK 317
           D+ RK+L H  +   Q+ KAA +IN   L EM VP    +ALPK  K
Sbjct: 254 DSERKKLLHKSKVVYQVFKAAKSINENILLEMPVPTIIRDALPKSGK 300